Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 3.7e-114 414.8 205 100.0
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 6.7e-31 138.3 211 42.7
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 1.1e-28 131.0 212 42.0
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 2.0e-27 126.7 207 40.6
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 3.5e-27 125.9 210 39.5
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 4.5e-27 125.6 210 41.4
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 4.5e-27 125.6 209 40.7
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 1.7e-26 123.6 210 41.0
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 5.0e-26 122.1 207 40.6
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 6.5e-26 121.7 212 41.5
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 3.2e-25 119.4 209 42.1
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 5.5e-25 118.6 209 37.8
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 3.6e-24 115.9 163 47.9
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 6.1e-24 115.2 221 38.0
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 1.8e-23 113.6 205 40.0
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 2.3e-23 113.2 165 44.8
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 5.2e-23 112.1 159 44.7
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 8.8e-23 111.3 164 43.9
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 2.0e-22 110.2 159 42.8
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 2.0e-22 110.2 157 42.0
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 2.0e-22 110.2 156 44.2
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 2.6e-22 109.8 159 47.2
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 2.6e-22 109.8 158 41.8
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 7.5e-22 108.2 219 38.8
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 7.5e-22 108.2 159 45.3
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 9.8e-22 107.8 189 41.8
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.7e-21 107.1 118 49.2
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 1.7e-21 107.1 189 37.6
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 4.8e-21 105.5 126 46.0
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.1e-20 104.4 108 52.8
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 1.4e-20 104.0 157 43.9
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 3.1e-20 102.8 243 35.4
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 4.1e-20 102.4 159 43.4
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 7.0e-20 101.7 208 35.6
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 1.2e-19 100.9 70 65.7
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 2.0e-19 100.1 172 41.9
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 4.5e-19 99.0 76 65.8
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 2.3e-18 96.7 161 42.9
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 5.0e-18 95.5 153 41.2
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 6.5e-18 95.1 137 43.1
Lalb_Chr22g0358161 Lupinus albus HOM05D007667 ORTHO05D008033 2.5e-17 93.2 109 49.5
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 1.2e-16 90.9 164 43.9
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 2.1e-16 90.1 134 44.8
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 3.6e-16 89.4 159 42.1
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 1.8e-15 87.0 125 48.0
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 3.0e-15 86.3 228 35.5
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 8.8e-15 84.7 76 59.2
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 2.6e-14 83.2 68 63.2
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 4.4e-14 82.4 71 60.6
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 7.5e-14 81.6 193 34.7
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 1.7e-13 80.5 187 33.7
Actinidia37860 Actinidia chinensis HOM05D007667 ORTHO05D008033 2.2e-13 80.1 164 33.5
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 2.2e-13 80.1 205 31.2
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 2.2e-13 80.1 200 34.5
AUR62020980 Chenopodium quinoa HOM05D007667 ORTHO05D008033 3.7e-13 79.3 72 55.6
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 6.3e-13 78.6 87 44.8
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 1.1e-12 77.8 164 36.6
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 4.1e-12 75.9 74 54.1
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.3e-10 70.1 72 50.0
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 3.8e-10 69.3 137 38.7
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 8.6e-10 68.2 187 29.4
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 1.5e-09 67.4 72 50.0
MBI13_g08646_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 1.9e-09 67.0 72 50.0
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 2.5e-09 66.6 98 37.8
MELO3C019169.2 Cucumis melo HOM05D007667 ORTHO05D008033 3.3e-09 66.2 79 46.8
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 3.3e-09 66.2 79 45.6
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 3.3e-09 66.2 66 54.5
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 7.3e-09 65.1 73 47.9
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 7.3e-09 65.1 138 34.8
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 7.3e-09 65.1 89 37.1
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 9.5e-09 64.7 134 31.3
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 9.5e-09 64.7 130 28.5
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 9.5e-09 64.7 80 42.5
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 1.2e-08 64.3 98 36.7
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 2.1e-08 63.5 105 34.3
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 2.8e-08 63.2 96 35.4
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 2.8e-08 63.2 96 35.4
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 3.6e-08 62.8 123 33.3
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 3.6e-08 62.8 92 37.0
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 3.6e-08 62.8 123 33.3
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 4.7e-08 62.4 92 37.0
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 4.7e-08 62.4 83 41.0
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 8.0e-08 61.6 106 35.8
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 8.0e-08 61.6 106 34.9
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 8.0e-08 61.6 106 35.8
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 8.0e-08 61.6 203 23.6
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 1.0e-07 61.2 109 35.8
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 1.0e-07 61.2 109 35.8
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 1.4e-07 60.8 109 34.9
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 1.4e-07 60.8 109 34.9
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 1.4e-07 60.8 109 33.0
PSO339G5815 Papaver somniferum HOM05D007667 ORTHO05D008033 1.8e-07 60.5 78 39.7
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 2.3e-07 60.1 104 31.7
PSO384G0308 Papaver somniferum HOM05D007667 ORTHO05D008033 5.2e-07 58.9 75 40.0
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 6.8e-07 58.5 109 33.9


User provided reference genes

Program Settings