Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.1e-96 356.7 187 100.0
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 5.7e-37 158.3 156 59.6
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.7e-33 146.7 178 52.2
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.3e-28 130.6 168 50.6
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.1e-27 127.5 164 49.4
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 4.1e-27 125.6 146 54.8
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.4e-27 125.2 194 45.4
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.2e-26 124.0 149 50.3
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.6e-26 123.6 191 47.1
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.3e-25 120.6 170 45.9
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.3e-25 119.8 163 51.5
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 3.0e-25 119.4 197 42.6
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 3.0e-25 119.4 176 45.5
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.9e-25 119.0 186 46.2
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 5.0e-25 118.6 163 50.3
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.1e-24 117.5 197 46.7
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-24 116.7 172 47.1
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.3e-24 115.9 159 50.9
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 3.3e-24 115.9 198 43.9
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 4.3e-24 115.5 161 47.8
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 5.6e-24 115.2 178 45.5
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 9.5e-24 114.4 187 43.9
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.2e-23 114.0 155 46.5
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.2e-23 114.0 147 51.0
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 1.2e-23 114.0 163 50.9
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 1.6e-23 113.6 185 45.4
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.6e-23 113.6 152 46.1
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 3.6e-23 112.5 199 43.2
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 3.6e-23 112.5 177 47.5
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.1e-22 110.9 189 41.8
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.8e-22 110.2 193 46.1
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 4.0e-22 109.0 159 45.9
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 5.2e-22 108.6 163 46.6
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 5.2e-22 108.6 188 43.6
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 5.2e-22 108.6 191 42.4
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 6.8e-22 108.2 162 46.9
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 6.8e-22 108.2 184 46.2
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 8.9e-22 107.8 172 48.8
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 8.9e-22 107.8 172 48.8
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.0e-21 106.7 139 51.1
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 2.0e-21 106.7 172 44.2
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.0e-21 106.7 163 47.2
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 2.0e-21 106.7 169 48.5
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 2.6e-21 106.3 193 39.4
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.6e-21 106.3 191 41.9
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 3.4e-21 105.9 175 42.9
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 3.4e-21 105.9 163 44.2
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 3.4e-21 105.9 185 45.4
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.5e-21 104.8 177 43.5
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 9.8e-21 104.4 177 42.4
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.7e-20 103.6 191 39.8
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.2e-20 103.2 155 49.7
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 2.9e-20 102.8 183 42.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 3.7e-20 102.4 163 44.8
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 3.7e-20 102.4 151 51.0
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 4.9e-20 102.1 184 44.6
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 4.9e-20 102.1 160 43.1
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 4.9e-20 102.1 191 41.9
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.4e-19 99.8 150 50.0
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 2.4e-19 99.8 170 42.9
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 4.1e-19 99.0 131 48.9
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 7.1e-19 98.2 188 39.9
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 9.2e-19 97.8 126 46.0
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.2e-18 97.4 162 46.3
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 1.6e-18 97.1 164 42.7
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 2.1e-18 96.7 186 43.0
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.7e-18 96.3 188 37.8
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 6.0e-18 95.1 169 41.4
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 7.8e-18 94.7 188 40.4
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 7.8e-18 94.7 170 45.3
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.8e-18 94.7 149 45.6
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 7.8e-18 94.7 149 45.6
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.0e-17 94.4 166 41.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.0e-17 94.4 171 45.0
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.0e-17 94.4 158 41.8
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.0e-17 94.4 177 37.9
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 3.0e-17 92.8 169 39.6
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 3.0e-17 92.8 137 45.3
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.0e-17 92.8 149 44.3
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 3.0e-17 92.8 111 55.0
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 3.9e-17 92.4 175 40.0
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 5.1e-17 92.0 194 41.2
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 5.1e-17 92.0 169 45.0
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 5.1e-17 92.0 176 39.8
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 6.6e-17 91.7 192 40.6
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 6.6e-17 91.7 154 48.1
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 6.6e-17 91.7 191 41.4
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 8.6e-17 91.3 180 42.2
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 8.6e-17 91.3 189 37.6
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 8.6e-17 91.3 167 41.9
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 8.6e-17 91.3 167 41.9
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 8.6e-17 91.3 130 45.4
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 8.6e-17 91.3 170 41.8
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 1.1e-16 90.9 119 47.9
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.5e-16 90.5 166 41.0
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.5e-16 90.5 169 40.2
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 1.9e-16 90.1 179 41.3
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.9e-16 90.1 138 43.5
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.3e-16 89.4 182 39.6
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 3.3e-16 89.4 179 41.9
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 3.3e-16 89.4 175 39.4
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 3.3e-16 89.4 179 41.9
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 3.3e-16 89.4 180 41.1
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 4.3e-16 89.0 171 39.2
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 5.6e-16 88.6 165 41.8
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 5.6e-16 88.6 165 41.8
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 7.3e-16 88.2 199 37.2
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.3e-16 88.2 85 56.5
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 7.3e-16 88.2 180 42.2
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 7.3e-16 88.2 157 41.4
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 7.3e-16 88.2 167 43.1
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 9.5e-16 87.8 176 42.0
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.2e-15 87.4 170 42.9
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-15 87.4 161 42.2
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.2e-15 87.4 131 44.3
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.2e-15 87.4 171 44.4
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.2e-15 87.4 144 42.4
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.6e-15 87.0 171 41.5
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.1e-15 86.7 142 43.0
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 2.8e-15 86.3 111 47.7
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 3.6e-15 85.9 168 40.5
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 3.6e-15 85.9 167 40.1
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 4.7e-15 85.5 151 41.1
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.1e-14 84.3 157 41.4
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.4e-14 84.0 107 48.6
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.1e-14 82.8 142 42.3
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 5.2e-14 82.0 169 41.4
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 5.2e-14 82.0 135 41.5
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 6.8e-14 81.6 128 46.9
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.5e-13 80.5 226 35.8
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 2.6e-13 79.7 176 38.1
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.4e-13 79.3 182 37.4
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 4.4e-13 79.0 102 45.1
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 9.9e-13 77.8 179 34.1
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.3e-12 77.4 80 53.8
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.3e-12 77.4 179 39.7
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.9e-12 76.3 180 34.4
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.7e-12 75.9 170 36.5
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 4.9e-12 75.5 169 37.9
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 4.9e-12 75.5 169 37.9
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 4.9e-12 75.5 169 37.9
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 6.4e-12 75.1 198 39.9
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-11 74.3 195 35.9
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.1e-11 74.3 127 48.8
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 1.4e-11 73.9 117 45.3
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 4.1e-11 72.4 168 33.3
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 4.1e-11 72.4 145 35.9
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 7.1e-11 71.6 114 41.2
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 7.1e-11 71.6 143 37.8
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 2.1e-10 70.1 165 35.8
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 7.8e-10 68.2 102 47.1
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.0e-09 67.8 54 61.1
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.7e-09 67.0 117 47.9
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 2.3e-09 66.6 131 38.9
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.9e-08 63.5 56 57.1
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 2.5e-08 63.2 100 41.0
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.8e-06 55.1 77 39.0
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.8e-06 55.1 98 39.8


User provided reference genes

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