Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.4e-99 365.5 187 100.0
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 5.8e-29 131.7 71 94.4
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.2e-23 114.0 62 93.5
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.2e-23 114.0 67 86.6
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 1.6e-23 113.6 74 81.1
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 2.1e-23 113.2 62 91.9
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.6e-23 112.5 82 75.6
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 4.7e-23 112.1 70 84.3
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 4.7e-23 112.1 70 84.3
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 4.7e-23 112.1 62 91.9
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 6.2e-23 111.7 86 68.6
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 6.2e-23 111.7 62 91.9
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 8.1e-23 111.3 62 91.9
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.1e-22 110.9 62 90.3
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.1e-22 110.9 62 90.3
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.1e-22 110.9 70 81.4
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.1e-22 110.9 74 81.1
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.4e-22 110.5 70 82.9
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.4e-22 110.5 70 82.9
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.8e-22 110.2 65 86.2
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.3e-22 109.8 69 85.5
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 2.3e-22 109.8 68 82.4
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 3.1e-22 109.4 62 90.3
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 3.1e-22 109.4 67 83.6
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.1e-22 109.4 62 87.1
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 3.1e-22 109.4 72 80.6
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 5.2e-22 108.6 68 80.9
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 5.2e-22 108.6 68 80.9
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 5.2e-22 108.6 62 85.5
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 6.8e-22 108.2 72 77.8
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 8.9e-22 107.8 59 91.5
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 1.2e-21 107.5 71 81.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.5e-21 107.1 77 72.7
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 1.5e-21 107.1 67 82.1
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 2.0e-21 106.7 67 80.6
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.0e-21 106.7 69 84.1
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.6e-21 106.3 77 71.4
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 2.6e-21 106.3 71 78.9
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 3.4e-21 105.9 77 74.0
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 3.4e-21 105.9 67 80.6
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 3.4e-21 105.9 93 66.7
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 3.4e-21 105.9 70 78.6
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 3.4e-21 105.9 65 78.5
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.4e-21 105.9 62 83.9
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.4e-21 105.9 67 82.1
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 4.4e-21 105.5 62 83.9
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 4.4e-21 105.5 77 71.4
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 7.5e-21 104.8 74 73.0
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 7.5e-21 104.8 62 82.3
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 7.5e-21 104.8 68 79.4
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 9.8e-21 104.4 68 82.4
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 9.8e-21 104.4 62 82.3
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 9.8e-21 104.4 59 86.4
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 9.8e-21 104.4 69 79.7
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 9.8e-21 104.4 62 83.9
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.3e-20 104.0 77 72.7
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.3e-20 104.0 70 74.3
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 1.3e-20 104.0 69 78.3
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 1.7e-20 103.6 73 71.2
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.7e-20 103.6 69 79.7
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.7e-20 103.6 70 77.1
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.2e-20 103.2 57 91.2
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 2.9e-20 102.8 66 78.8
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.7e-20 102.4 65 78.5
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 3.7e-20 102.4 62 83.9
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 4.9e-20 102.1 62 82.3
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 4.9e-20 102.1 67 77.6
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 4.9e-20 102.1 60 85.0
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.9e-20 102.1 63 82.5
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 4.9e-20 102.1 69 76.8
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 6.4e-20 101.7 62 82.3
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.4e-20 101.7 59 83.1
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.4e-20 101.7 59 83.1
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 6.4e-20 101.7 68 72.1
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 8.3e-20 101.3 69 79.7
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 8.3e-20 101.3 69 79.7
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 8.3e-20 101.3 66 78.8
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 8.3e-20 101.3 66 78.8
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 8.3e-20 101.3 69 78.3
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 8.3e-20 101.3 62 80.6
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 8.3e-20 101.3 66 74.2
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 8.3e-20 101.3 63 82.5
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 8.3e-20 101.3 66 75.8
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.1e-19 100.9 61 83.6
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 1.4e-19 100.5 66 77.3
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 1.4e-19 100.5 66 77.3
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 1.4e-19 100.5 66 77.3
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.4e-19 100.5 62 82.3
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.9e-19 100.1 62 82.3
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 2.4e-19 99.8 71 73.2
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 2.4e-19 99.8 58 84.5
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 2.4e-19 99.8 69 78.3
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 2.4e-19 99.8 70 70.0
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 2.4e-19 99.8 56 89.3
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.2e-19 99.4 62 82.3
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 3.2e-19 99.4 66 75.8
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 4.1e-19 99.0 67 80.6
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 4.1e-19 99.0 58 86.2
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 4.1e-19 99.0 64 79.7
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 4.1e-19 99.0 66 78.8
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 4.1e-19 99.0 65 76.9
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 4.1e-19 99.0 58 86.2
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 5.4e-19 98.6 71 73.2
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 7.1e-19 98.2 71 67.6
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 7.1e-19 98.2 58 82.8
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 7.1e-19 98.2 62 79.0
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 9.2e-19 97.8 55 89.1
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 9.2e-19 97.8 68 73.5
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.2e-18 97.4 58 81.0
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 1.2e-18 97.4 66 72.7
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.6e-18 97.1 62 80.6
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 1.6e-18 97.1 68 72.1
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.6e-18 97.1 71 73.2
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.6e-18 97.1 71 73.2
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 2.7e-18 96.3 62 77.4
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 3.5e-18 95.9 71 73.2
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 3.5e-18 95.9 64 75.0
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 4.6e-18 95.5 58 81.0
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 7.8e-18 94.7 73 67.1
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.0e-17 94.4 77 63.6
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-17 94.0 61 75.4
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 2.3e-17 93.2 73 68.5
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.0e-17 92.8 68 70.6
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 3.0e-17 92.8 59 78.0
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 5.1e-17 92.0 65 70.8
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 5.1e-17 92.0 62 74.2
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 6.6e-17 91.7 65 69.2
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.6e-17 91.7 58 74.1
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 6.6e-17 91.7 71 66.2
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 8.6e-17 91.3 58 74.1
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 8.6e-17 91.3 62 74.2
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 3.3e-16 89.4 54 79.6
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 2.1e-15 86.7 57 71.9
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 1.4e-14 84.0 55 74.5
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.4e-14 84.0 69 60.9
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.4e-14 84.0 69 60.9
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 4.0e-14 82.4 51 84.3
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.2e-13 80.9 80 56.2
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 2.6e-13 79.7 56 75.0
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.6e-13 79.7 56 75.0
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 2.6e-13 79.7 58 70.7
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.6e-13 79.7 72 58.3
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 7.6e-13 78.2 58 65.5
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.3e-12 77.4 62 62.9
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 2.2e-12 76.6 40 92.5
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 2.9e-12 76.3 58 60.3
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 4.9e-12 75.5 48 77.1
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 1.4e-11 73.9 61 57.4
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 3.2e-11 72.8 50 74.0
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 4.1e-11 72.4 53 66.0
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 4.1e-11 72.4 69 50.7
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 5.4e-11 72.0 68 52.9
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 2.7e-10 69.7 61 55.7
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.3e-09 67.4 54 66.7
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 7.3e-08 61.6 33 87.9
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 1.6e-07 60.5 69 43.5


User provided reference genes

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