Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.5e-156 556.2 293 100.0
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.2e-127 458.4 285 83.5
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 4.2e-127 458.4 285 83.9
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 1.6e-126 456.4 285 84.6
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 6.1e-126 454.5 285 82.5
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 6.1e-126 454.5 288 82.6
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 6.1e-126 454.5 288 82.6
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 7.9e-126 454.1 286 83.2
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 3.9e-125 451.8 286 82.5
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 3.9e-125 451.8 286 82.9
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 5.1e-125 451.4 286 83.2
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 5.1e-125 451.4 293 80.9
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 6.7e-125 451.1 286 83.2
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-125 450.7 286 82.5
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-125 450.7 286 82.5
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.1e-124 450.3 286 82.2
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 2.0e-124 449.5 286 82.5
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 5.7e-124 448.0 285 81.8
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 7.4e-124 447.6 304 78.0
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 9.7e-124 447.2 286 81.1
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 1.7e-123 446.4 295 81.7
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 1.7e-123 446.4 285 81.4
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 4.1e-122 441.8 286 81.8
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 5.3e-122 441.4 285 80.7
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.5e-121 439.9 285 80.7
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 2.6e-121 439.1 286 80.8
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 7.7e-121 437.6 286 80.8
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.7e-120 436.4 293 80.2
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 2.2e-120 436.0 300 76.3
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 2.2e-120 436.0 305 76.7
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 2.9e-120 435.6 305 76.7
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 2.9e-120 435.6 304 76.3
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 6.5e-120 434.5 285 79.3
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 6.5e-120 434.5 285 79.6
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 6.5e-120 434.5 285 79.6
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 3.2e-119 432.2 306 74.2
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 3.2e-119 432.2 285 79.3
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 3.2e-119 432.2 286 78.7
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 9.4e-119 430.6 286 78.7
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.2e-118 430.3 293 77.8
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.7e-118 429.1 306 73.9
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 2.7e-118 429.1 293 81.9
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 2.7e-118 429.1 285 78.9
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 3.6e-118 428.7 285 78.9
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 4.7e-118 428.3 286 78.7
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 4.7e-118 428.3 285 79.3
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 6.1e-118 427.9 282 79.1
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 8.0e-118 427.6 306 73.9
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 8.0e-118 427.6 286 78.7
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.0e-117 427.2 293 77.1
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 1.0e-117 427.2 285 78.9
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.4e-117 426.8 293 77.1
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 1.4e-117 426.8 285 78.9
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 1.4e-117 426.8 293 77.5
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.7e-117 424.5 270 82.2
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 6.7e-117 424.5 282 78.7
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 8.8e-117 424.1 285 77.2
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 8.8e-117 424.1 285 76.5
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 1.1e-116 423.7 285 78.6
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.5e-116 423.3 271 81.9
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.0e-116 422.9 285 78.2
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 2.0e-116 422.9 287 77.0
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 2.6e-116 422.5 299 76.9
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 3.3e-116 422.2 299 76.9
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 4.4e-116 421.8 286 78.3
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 4.4e-116 421.8 285 77.5
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 4.4e-116 421.8 286 78.0
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 5.7e-116 421.4 283 78.4
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.4e-116 421.0 272 81.2
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 9.7e-116 420.6 325 70.8
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.7e-116 420.6 270 81.5
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 9.7e-116 420.6 286 78.7
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 1.7e-115 419.9 285 77.5
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 2.2e-115 419.5 285 76.8
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.2e-115 419.5 298 74.2
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 2.8e-115 419.1 292 74.7
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 2.8e-115 419.1 285 76.8
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 3.7e-115 418.7 286 77.6
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 6.3e-115 417.9 288 77.1
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 8.2e-115 417.5 285 76.1
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 8.2e-115 417.5 317 71.6
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 1.1e-114 417.2 285 76.5
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 1.4e-114 416.8 292 74.3
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 1.4e-114 416.8 285 76.1
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.8e-114 416.4 289 74.4
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 2.4e-114 416.0 286 76.6
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 3.1e-114 415.6 285 75.4
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 4.1e-114 415.2 281 78.3
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 4.1e-114 415.2 319 70.8
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 5.3e-114 414.8 322 70.8
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 5.3e-114 414.8 286 76.2
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 9.1e-114 414.1 298 73.5
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 1.2e-113 413.7 285 76.5
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.6e-113 413.3 285 75.8
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 1.6e-113 413.3 293 74.4
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.6e-113 413.3 286 76.2
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.6e-113 412.5 285 76.1
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 2.6e-113 412.5 286 75.9
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 3.5e-113 412.1 287 76.7
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 3.5e-113 412.1 287 76.7
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 3.5e-113 412.1 281 77.6
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.9e-112 409.1 287 76.3
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 3.8e-112 408.7 286 76.9
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 8.5e-112 407.5 282 76.2
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.5e-111 406.0 271 79.7
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 3.2e-111 405.6 286 74.8
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 3.2e-111 405.6 286 76.2
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 4.2e-111 405.2 285 75.4
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 4.7e-110 401.7 293 71.7
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.4e-109 400.2 304 71.4
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.7e-108 394.0 289 75.1
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 5.3e-106 388.3 285 71.2
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.9e-104 382.5 281 71.5
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.8e-104 382.1 283 71.4
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-103 380.6 270 77.0
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.5e-103 380.2 347 63.1
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.8e-101 371.3 285 70.2
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.5e-100 370.2 285 70.2
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.0e-100 369.8 283 70.0
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.3e-99 367.1 238 79.0
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 2.8e-99 365.9 292 67.5
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 8.3e-99 364.4 286 67.8
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 8.3e-99 364.4 245 76.7
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 3.1e-98 362.5 286 66.1
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 2.0e-97 359.8 285 69.1
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 8.6e-96 354.4 217 86.6
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 8.6e-96 354.4 280 67.5
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 1.9e-95 353.2 283 65.0
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 5.5e-95 351.7 284 65.5
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 5.5e-95 351.7 277 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 2.0e-84 316.6 289 56.1
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.5e-79 300.4 204 77.5
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 9.5e-79 297.7 296 58.4
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 2.8e-78 296.2 272 62.1
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.3e-75 287.3 288 52.4
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 1.1e-71 274.2 204 69.6
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 5.6e-71 271.9 163 83.4
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 9.5e-71 271.2 208 68.8
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.1e-66 257.7 257 58.0
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 1.2e-65 254.2 282 52.1
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 5.1e-64 248.8 184 75.5
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.9e-59 232.3 163 74.2
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 5.1e-56 222.2 252 45.6
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 4.2e-42 176.0 174 62.1
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 5.4e-42 175.6 183 55.7
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 5.4e-42 175.6 183 55.7
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 1.4e-37 161.0 107 73.8
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 1.4e-37 161.0 107 73.8
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 5.1e-32 142.5 171 53.8
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 5.7e-31 139.0 96 70.8
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 2.4e-29 133.7 81 80.2
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 1.3e-27 127.9 97 70.1
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 7.4e-23 112.1 77 75.3
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 3.7e-22 109.8 85 62.4
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.8e-16 90.9 58 79.3
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 3.9e-16 89.7 83 60.2
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.8e-14 83.6 52 84.6
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 1.4e-13 81.3 83 55.4
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.8e-13 80.9 70 71.4
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 2.4e-13 80.5 83 53.0
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 4.5e-12 76.3 70 54.3
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 1.3e-11 74.7 68 57.4
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 5.0e-11 72.8 68 57.4
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 5.0e-11 72.8 83 51.8
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.1e-10 71.6 59 57.6
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.9e-10 70.9 85 45.9
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 6.7e-08 62.4 39 71.8
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 4.4e-07 59.7 38 71.1
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 4.4e-07 59.7 38 71.1


User provided reference genes

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