Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020457 Daucus carota HOM05D059321 ORTHO05D045047 3.9e-240 834.3 400 100.0
Ciclev10033438m.g Citrus clementina HOM05D000007 ORTHO05D007252 5.9e-23 112.8 387 28.4
Migut.J01047 Erythranthe guttata HOM05D000007 ORTHO05D007252 1.7e-22 111.3 377 27.6
DCAR_020459 Daucus carota HOM05D059321 ORTHO05D045047 1.1e-21 108.6 182 40.1
Hma1.2p1_0022F.1_g014760 Hydrangea macrophylla HOM05D000007 ORTHO05D007252 9.5e-21 105.5 364 28.3
Dinv41199 Davidia involucrata HOM05D001519 ORTHO05D001403 4.7e-20 103.2 390 26.2
Rhsim03G0268000 Rhododendron simsii HOM05D000007 ORTHO05D007252 1.2e-18 98.6 340 25.9
MSTRG.5952 Avicennia marina HOM05D000007 ORTHO05D007252 4.4e-18 96.7 390 24.9
Hma1.2p1_0084F.1_g043690 Hydrangea macrophylla HOM05D000007 ORTHO05D007252 2.2e-17 94.4 372 26.9
SGA_v2.0_scaffold31G12737 Striga asiatica HOM05D000007 ORTHO05D007252 4.9e-17 93.2 356 24.7
Oeu056889.1 Olea europaea HOM05D000007 ORTHO05D007252 1.6e-15 88.2 383 26.4
TAR371G1268 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.7e-15 87.4 312 28.5
COL.COLO4_36676 Corchorus olitorius HOM05D000007 ORTHO05D007252 4.5e-15 86.7 411 22.9
SGA_v2.0_scaffold13G06731 Striga asiatica HOM05D000007 ORTHO05D007252 7.8e-15 85.9 377 24.7
Actinidia38511 Actinidia chinensis HOM05D000007 ORTHO05D007252 2.9e-14 84.0 269 24.5
Actinidia38508 Actinidia chinensis HOM05D000007 ORTHO05D013933 6.6e-14 82.8 368 23.9
Oeu014895.1 Olea europaea HOM05D000007 ORTHO05D007252 1.1e-13 82.0 329 26.7
Rhsim07G0245000 Rhododendron simsii HOM05D001026 ORTHO05D007252 1.5e-13 81.6 299 24.7
TAR375G0750 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.9e-13 81.3 340 25.6
CSS0040592 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D003666 3.6e-12 77.0 396 23.5
Nitab4.5_0000157g0070 Nicotiana tabacum HOM05D000007 ORTHO05D007252 6.1e-12 76.3 311 23.8
TAR371G0451 Trochodendron aralioides HOM05D000007 ORTHO05D007252 6.1e-12 76.3 315 25.4
COL.COLO4_04270 Corchorus olitorius HOM05D000007 ORTHO05D007252 8.0e-12 75.9 413 24.7
TAR371G0533 Trochodendron aralioides HOM05D000007 ORTHO05D007252 8.0e-12 75.9 311 25.4
Rhsim04G0040700 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.4e-11 75.1 301 25.2
CSS0034833 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D003666 1.8e-11 74.7 392 23.5
COL.COLO4_34567 Corchorus olitorius HOM05D007162 ORTHO05D007631 3.0e-11 73.9 367 24.5
TAR371G0647 Trochodendron aralioides HOM05D000007 ORTHO05D007252 5.2e-11 73.2 325 25.8
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 8.9e-11 72.4 366 24.0
SalBow1G7020 Salvia bowleyana HOM05D000007 ORTHO05D000017 1.2e-10 72.0 328 24.1
SGA_v2.0_scaffold136G35021 Striga asiatica HOM05D000664 ORTHO05D000491 1.7e-09 68.2 401 22.2
Atru.chr2.2999 Acer truncatum HOM05D000007 ORTHO05D000017 2.2e-09 67.8 272 23.9
Gorai.010G208700 Gossypium raimondii HOM05D000007 ORTHO05D000039 2.9e-09 67.4 277 23.5
RcHm_v2.0_Chr2g0131131 Rosa chinensis HOM05D000007 ORTHO05D000521 3.7e-09 67.0 346 22.8
Ciclev10033888m.g Citrus clementina HOM05D000007 ORTHO05D000017 4.9e-09 66.6 296 23.6
Gorai.002G031500 Gossypium raimondii HOM05D007162 ORTHO05D007631 4.9e-09 66.6 337 22.8
Ca_00957_v3 Cicer arietinum L. HOM05D007162 ORTHO05D007631 6.4e-09 66.2 367 24.8
Gohir.D01G023577 Gossypium hirsutum HOM05D007162 ORTHO05D007631 6.4e-09 66.2 337 22.8
CSS0034442 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 8.3e-09 65.9 404 23.8
PSO732G0517 Papaver somniferum HOM05D000007 ORTHO05D000676 8.3e-09 65.9 333 23.4
QL03p005911 Quercus lobata HOM05D000007 ORTHO05D000039 8.3e-09 65.9 331 23.3
QL02p069962 Quercus lobata HOM05D000007 ORTHO05D050630 1.4e-08 65.1 249 26.5
Migut.C00204 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.8e-08 64.7 304 24.7
Cc06_g22260 Coffea canephora HOM05D000007 ORTHO05D000521 2.4e-08 64.3 358 22.6
Duzib151G0437 Durio zibethinus HOM05D007162 ORTHO05D007631 2.4e-08 64.3 367 23.2
PSO017G2717 Papaver somniferum HOM05D000007 ORTHO05D000676 2.4e-08 64.3 342 25.4
QL11p003899 Quercus lobata HOM05D000007 ORTHO05D000039 2.4e-08 64.3 299 22.1
Rhsim04G0042200 Rhododendron simsii HOM05D000007 ORTHO05D000521 2.4e-08 64.3 303 24.8
TWI56G0955 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 2.4e-08 64.3 374 22.5
Duzib212G0788 Durio zibethinus HOM05D007162 ORTHO05D007631 4.1e-08 63.5 362 22.7
SalBow1G0100 Salvia bowleyana HOM05D000007 ORTHO05D000017 4.1e-08 63.5 260 26.2
Atru.chr3.38 Acer truncatum HOM05D000007 ORTHO05D000017 5.4e-08 63.2 360 23.1
Duzib268G0983 Durio zibethinus HOM05D000007 ORTHO05D000017 5.4e-08 63.2 294 24.1
Migut.C00205 Erythranthe guttata HOM05D000007 ORTHO05D000017 7.0e-08 62.8 314 24.5
QL04p064452 Quercus lobata HOM05D000007 ORTHO05D000039 7.0e-08 62.8 290 24.1
TAR374G0955 Trochodendron aralioides HOM05D013022 ORTHO05D007252 7.0e-08 62.8 219 26.0
Duzib268G1653 Durio zibethinus HOM05D000007 ORTHO05D000017 3.5e-07 60.5 292 24.0
Psat1g162520 Pisum sativum HOM05D007162 ORTHO05D007631 3.5e-07 60.5 360 22.5
Duzib268G0143 Durio zibethinus HOM05D000007 ORTHO05D000017 4.6e-07 60.1 292 25.0
Migut.F01808 Erythranthe guttata HOM05D000007 ORTHO05D000017 4.6e-07 60.1 340 22.1
FAN19G2785 Fragaria x ananassa HOM05D003981 ORTHO05D003666 4.6e-07 60.1 157 28.0
Atru.chr13.437 Acer truncatum HOM05D000007 ORTHO05D000017 5.9e-07 59.7 306 24.5
Os09g0448100 Oryza sativa ssp. japonica HOM05D000007 ORTHO05D007252 5.9e-07 59.7 317 23.7
FvH4_1g25190 Fragaria vesca HOM05D003981 ORTHO05D003666 7.8e-07 59.3 157 28.0
Migut.C00199 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.0e-06 58.9 304 23.0
QL03p005929 Quercus lobata HOM05D000007 ORTHO05D000039 1.0e-06 58.9 334 21.9
QL06p013113 Quercus lobata HOM05D007162 ORTHO05D007631 1.0e-06 58.9 350 22.9
QL08p040501 Quercus lobata HOM05D000007 ORTHO05D000039 1.0e-06 58.9 355 23.4
RcHm_v2.0_Chr6g0275741 Rosa chinensis HOM05D000007 ORTHO05D000017 1.0e-06 58.9 286 24.5
SalBow1G2845 Salvia bowleyana HOM05D000007 ORTHO05D000017 1.0e-06 58.9 220 27.3
SalBow1G3947 Salvia bowleyana HOM05D000007 ORTHO05D000017 1.0e-06 58.9 220 27.3
TPR.G33885 Trifolium pratense HOM05D007162 ORTHO05D007631 1.0e-06 58.9 365 22.7
Duzib268G1639 Durio zibethinus HOM05D000007 ORTHO05D000017 1.7e-06 58.2 291 24.7
FvH4_1g00300 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-06 58.2 286 23.8
Potri.010G149000 Populus trichocarpa HOM05D007162 ORTHO05D007631 1.7e-06 58.2 369 22.8
SalBow1G4331 Salvia bowleyana HOM05D000007 ORTHO05D000017 1.7e-06 58.2 317 24.0
SalBow1G6638 Salvia bowleyana HOM05D000007 ORTHO05D014678 1.7e-06 58.2 317 23.0
COL.COLO4_26717 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.3e-06 57.8 205 27.3
RcHm_v2.0_Chr2g0090931 Rosa chinensis HOM05D000007 ORTHO05D005026 2.3e-06 57.8 262 24.0
SalBow7G2037 Salvia bowleyana HOM05D000007 ORTHO05D000017 2.3e-06 57.8 343 22.4
FAN28G1536 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.0e-06 57.4 286 23.8
Lsat_1_v5_gn_7_77020 Lactuca sativa HOM05D000007 ORTHO05D000039 3.9e-06 57.0 269 23.0
RcHm_v2.0_Chr2g0084671 Rosa chinensis HOM05D000007 ORTHO05D000017 5.0e-06 56.6 281 24.2
Lj8C595T2 Lonicera japonica HOM05D000007 ORTHO05D000521 6.6e-06 56.2 267 24.3
Migut.C00203 Erythranthe guttata HOM05D000007 ORTHO05D000017 8.6e-06 55.8 302 23.5
Eucgr.J00721 Eucalyptus grandis HOM05D000007 ORTHO05D003666 8.6e-06 55.8 300 21.0


User provided reference genes

Program Settings