Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 0.0e+00 2030.0 1045 100.0
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 3.4e-248 862.4 1141 48.7
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.7e-141 508.1 1113 36.0
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.0e-119 435.6 1023 36.3
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.8e-119 434.9 1010 35.1
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.5e-118 431.8 1072 34.2
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 4.6e-91 340.5 1024 30.8
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.5e-86 325.5 1056 31.5
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 6.2e-80 303.5 994 32.0
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.6e-75 288.9 1040 29.5
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.3e-74 285.8 950 29.8
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.8e-72 278.1 1044 29.7
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 8.1e-72 276.6 1030 29.4
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 1.2e-67 262.7 1018 29.3
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.2e-67 262.7 1024 29.1
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 7.8e-67 260.0 744 31.3
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 3.9e-66 257.7 1000 29.4
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 4.8e-64 250.8 1011 28.7
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.8e-63 248.8 1011 30.2
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 3.1e-63 248.1 998 28.9
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.5e-62 245.7 1063 29.0
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 2.6e-62 245.0 997 28.9
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 7.6e-62 243.4 991 28.0
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 2.9e-61 241.5 1019 27.9
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 4.9e-61 240.7 490 37.8
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 8.4e-61 240.0 1011 27.9
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.4e-60 238.4 1011 27.5
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 2.4e-60 238.4 1005 28.9
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.6e-59 235.7 1011 27.7
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.0e-58 233.0 1026 28.7
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.5e-57 229.2 985 27.9
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.6e-56 225.7 1060 27.5
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.0e-54 218.8 1040 28.8
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 4.5e-54 217.6 1026 27.2
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.2e-53 215.3 1026 27.2
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 1.4e-52 212.6 1037 29.5
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 6.0e-51 207.2 1044 28.4
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 5.1e-50 204.1 1002 27.2
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.5e-49 202.6 1077 27.6
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 3.3e-49 201.4 1037 28.5
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.6e-48 199.1 1058 26.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 1.8e-47 195.7 1023 26.6
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.1e-47 194.9 1019 27.2
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.5e-46 191.0 1016 27.7
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 4.5e-46 191.0 1025 27.0
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 4.5e-46 191.0 1011 27.2
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 7.1e-44 183.7 1010 26.4
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.6e-43 182.6 1010 26.5
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 2.1e-43 182.2 1020 27.0
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.0e-42 179.9 1122 26.9
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.0e-42 179.9 949 26.1
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.3e-42 178.7 1032 26.8
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 7.4e-41 173.7 1035 25.6
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 2.8e-40 171.8 990 26.9
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.8e-39 169.1 948 24.4
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 7.6e-38 163.7 1004 27.2
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.3e-37 162.9 994 26.5
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.0e-34 153.3 692 27.0
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.3e-34 152.1 1033 25.4
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.6e-32 146.0 997 24.9
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 9.0e-31 140.2 997 24.8
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.8e-29 134.8 1009 24.7
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.5e-29 134.0 837 25.8
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 1.2e-27 129.8 975 24.4
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.8e-26 125.9 1000 25.0
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.3e-24 119.8 817 24.6
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 4.1e-23 114.8 514 25.9
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.3e-21 109.8 1151 23.7
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.9e-21 108.6 1130 24.1
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 2.9e-21 108.6 755 25.3
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 2.9e-21 108.6 927 23.4
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 5.0e-21 107.8 1026 23.8
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 6.5e-21 107.5 542 26.2
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 8.5e-21 107.1 381 28.1
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.1e-20 106.7 414 29.2
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 4.2e-20 104.8 1020 23.8
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 7.2e-20 104.0 1084 23.2
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 4.7e-19 101.3 991 24.3
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 2.6e-17 95.5 853 23.8
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 5.7e-17 94.4 1024 22.9
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.7e-17 94.4 285 27.7
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 1.3e-16 93.2 172 36.6
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 2.8e-16 92.0 1006 24.2
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.7e-16 91.7 186 36.6
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.1e-15 90.1 590 25.6
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 1.4e-15 89.7 285 29.1
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.8e-15 89.4 815 24.3
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 9.1e-15 87.0 429 24.2
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 5.9e-14 84.3 357 27.2
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 2.9e-13 82.0 1034 22.1
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.1e-12 80.1 874 22.5
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.9e-12 79.3 344 27.9
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 4.2e-12 78.2 521 24.6
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.2e-11 76.6 211 32.2
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 2.7e-11 75.5 1099 21.9
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.6e-11 75.1 525 24.0
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 6.1e-11 74.3 1075 22.0
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.0e-10 73.6 296 27.4
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.4e-10 73.2 240 27.1
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.4e-10 73.2 238 27.7
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 3.0e-10 72.0 1118 22.5
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 3.0e-10 72.0 1118 22.5
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 5.2e-10 71.2 1051 22.7
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 6.7e-10 70.9 935 20.4
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 8.8e-10 70.5 208 28.8
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 2.0e-09 69.3 352 26.4
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 2.6e-09 68.9 915 23.2
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.6e-09 68.9 204 26.0
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 9.7e-09 67.0 293 25.3
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 1.3e-08 66.6 347 25.6
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 1.7e-08 66.2 207 27.1
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 1.7e-08 66.2 207 27.1
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 2.2e-08 65.9 274 25.5
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 2.2e-08 65.9 274 25.5
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 2.2e-08 65.9 274 25.5
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.7e-08 65.1 336 23.8
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 4.8e-08 64.7 192 26.6
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 4.8e-08 64.7 192 26.6
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 4.8e-08 64.7 1110 21.7
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 6.3e-08 64.3 228 26.3
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 8.2e-08 63.9 482 23.9
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.8e-07 62.8 779 23.1
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 4.1e-07 61.6 588 20.9
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 5.3e-07 61.2 213 28.6
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 5.3e-07 61.2 191 27.7
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 5.3e-07 61.2 184 29.9
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 5.3e-07 61.2 191 27.7
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 5.3e-07 61.2 434 23.0
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 7.0e-07 60.8 191 27.7
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 7.0e-07 60.8 191 27.7
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 9.1e-07 60.5 191 27.7
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 9.1e-07 60.5 177 29.4
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 1.6e-06 59.7 184 29.3
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.7e-06 58.9 176 33.0
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 3.5e-06 58.5 419 22.4


User provided reference genes

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