Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 1.6e-118 429.5 223 100.0
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 7.8e-33 144.8 256 43.8
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 9.6e-31 137.9 254 42.9
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 3.6e-30 136.0 236 42.8
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 2.4e-29 133.3 236 42.4
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 4.5e-28 129.0 233 45.1
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 3.8e-27 125.9 258 40.7
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 4.9e-27 125.6 202 43.6
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 4.9e-27 125.6 255 41.2
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 4.2e-26 122.5 257 40.9
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 2.1e-25 120.2 235 40.0
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 2.1e-25 120.2 234 39.7
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 2.7e-25 119.8 231 40.3
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 2.7e-25 119.8 239 39.7
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 7.9e-25 118.2 234 38.9
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 7.9e-25 118.2 233 40.8
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.0e-24 117.9 232 41.4
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 1.8e-24 117.1 235 41.7
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 3.0e-24 116.3 235 37.9
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.1e-23 114.4 236 40.3
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 1.1e-23 114.4 226 40.7
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 1.9e-23 113.6 232 39.2
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 1.9e-23 113.6 214 43.0
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 4.3e-23 112.5 238 37.8
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 5.6e-23 112.1 239 38.5
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 7.4e-23 111.7 239 40.6
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 7.4e-23 111.7 239 40.2
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 7.4e-23 111.7 228 39.0
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 1.3e-22 110.9 205 39.0
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 1.6e-22 110.5 233 37.8
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 2.8e-22 109.8 218 37.6
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 2.8e-22 109.8 253 37.5
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 2.8e-22 109.8 249 36.9
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 6.2e-22 108.6 239 39.3
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 6.2e-22 108.6 250 36.8
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.1e-21 107.8 228 38.2
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 1.1e-21 107.8 228 38.2
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 2.4e-21 106.7 239 36.0
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 2.4e-21 106.7 258 34.9
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 9.0e-21 104.8 227 36.6
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 1.2e-20 104.4 267 35.2
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 1.5e-20 104.0 235 35.3
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 2.0e-20 103.6 219 38.8
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 2.6e-20 103.2 237 35.4
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 2.6e-20 103.2 265 35.1
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 5.8e-20 102.1 197 37.6
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 7.6e-20 101.7 234 35.9
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 9.9e-20 101.3 206 36.9
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 9.9e-20 101.3 197 36.0
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 3.8e-19 99.4 250 34.8
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 4.9e-19 99.0 248 35.9
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 2.4e-18 96.7 227 37.0
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 3.2e-18 96.3 218 37.2
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 4.2e-18 95.9 211 36.0
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 5.5e-18 95.5 216 35.6
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 5.5e-18 95.5 233 35.6
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 7.1e-18 95.1 237 35.0
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 7.1e-18 95.1 250 35.6
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 9.3e-18 94.7 238 34.9
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 9.3e-18 94.7 238 34.9
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 9.3e-18 94.7 238 34.9
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 1.2e-17 94.4 260 33.8
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 4.6e-17 92.4 245 33.9
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 4.6e-17 92.4 251 33.9
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 4.6e-17 92.4 202 33.2
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 6.0e-17 92.0 194 37.1
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 7.9e-17 91.7 229 37.1
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 7.9e-17 91.7 238 33.6
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 7.9e-17 91.7 261 33.7
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.3e-16 90.9 256 34.4
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 1.8e-16 90.5 238 31.9
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 2.3e-16 90.1 210 34.3
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 3.0e-16 89.7 204 33.8
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 3.0e-16 89.7 241 32.8
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 5.1e-16 89.0 244 33.6
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 6.7e-16 88.6 211 37.0
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 6.7e-16 88.6 270 31.5
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 8.7e-16 88.2 247 34.0
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 1.1e-15 87.8 210 35.7
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 1.5e-15 87.4 209 35.9
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 1.9e-15 87.0 234 32.1
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.9e-15 87.0 196 33.2
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 2.5e-15 86.7 224 33.9
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 4.3e-15 85.9 211 35.5
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 5.6e-15 85.5 245 31.0
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 9.6e-15 84.7 213 36.2
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 9.6e-15 84.7 212 36.3
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 9.6e-15 84.7 230 32.2
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.6e-14 84.0 255 33.3
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 6.2e-14 82.0 278 30.6
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 1.4e-13 80.9 178 34.3
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 4.0e-13 79.3 166 37.3
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 5.3e-13 79.0 252 31.0
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 5.3e-13 79.0 235 31.9
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 2.0e-12 77.0 202 31.2
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 1.0e-11 74.7 77 57.1
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 2.9e-11 73.2 211 28.4
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.9e-11 73.2 239 29.3
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 6.5e-11 72.0 161 36.6
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.9e-10 70.5 259 30.1
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 3.2e-10 69.7 257 29.6
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 4.2e-10 69.3 180 33.9
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 9.3e-10 68.2 279 30.1
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 1.2e-09 67.8 207 32.9
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 3.0e-08 63.2 224 30.8
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 3.9e-08 62.8 100 45.0
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 3.9e-08 62.8 273 28.9
Lsat_1_v5_gn_5_150000 Lactuca sativa HOM05D003457 ORTHO05D009249 2.5e-07 60.1 111 39.6
ECA233G0397 Erigeron canadensis HOM05D003457 ORTHO05D009249 7.4e-07 58.5 189 30.2


User provided reference genes

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