Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 1.1e-162 576.6 297 100.0
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.5e-111 406.0 295 71.2
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 5.6e-111 404.8 295 69.5
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 9.5e-111 404.1 297 70.0
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.1e-109 400.6 295 70.5
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 6.8e-109 397.9 305 68.2
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.4e-108 395.6 305 67.9
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 1.7e-107 393.3 305 67.5
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.7e-107 393.3 305 67.5
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.8e-107 392.1 298 67.8
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.9e-107 391.7 301 67.8
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 4.9e-107 391.7 300 67.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.4e-107 391.3 301 67.8
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.1e-106 390.6 300 69.0
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 2.4e-106 389.4 309 66.3
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 2.1e-105 386.3 312 66.0
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 6.0e-105 384.8 296 66.2
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 1.0e-104 384.0 296 66.2
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 1.5e-103 380.2 252 75.0
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 2.5e-103 379.4 307 65.5
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 2.1e-102 376.3 297 66.0
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 1.1e-101 374.0 296 65.9
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 3.1e-101 372.5 295 65.8
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 6.9e-101 371.3 308 64.6
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 1.2e-100 370.5 305 65.6
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.2e-100 370.5 338 59.5
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 2.0e-100 369.8 297 66.7
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 2.6e-100 369.4 298 64.1
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 3.4e-100 369.0 297 63.3
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 3.4e-100 369.0 308 63.0
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 2.9e-99 365.9 296 62.2
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 8.4e-99 364.4 309 64.4
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 1.4e-98 363.6 312 63.8
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 3.2e-98 362.5 300 66.0
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 4.2e-98 362.1 297 62.6
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 7.1e-98 361.3 297 62.0
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 9.3e-98 360.9 296 64.2
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 1.2e-97 360.5 297 62.3
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 2.1e-97 359.8 298 64.4
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 2.7e-97 359.4 302 63.6
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 3.5e-97 359.0 297 63.6
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 6.0e-97 358.2 298 61.7
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 6.0e-97 358.2 298 61.7
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 1.0e-96 357.5 296 61.5
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.3e-96 356.3 293 63.8
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 3.9e-96 355.5 297 63.3
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 6.6e-96 354.8 296 65.2
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 3.3e-95 352.4 296 61.8
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 7.3e-95 351.3 312 61.5
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 2.8e-94 349.4 299 63.9
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 4.8e-94 348.6 297 62.0
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 4.0e-93 345.5 294 58.8
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 5.8e-92 341.7 302 60.3
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 1.7e-91 340.1 305 59.7
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 3.8e-91 339.0 317 59.3
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 4.9e-91 338.6 305 60.7
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 8.4e-91 337.8 317 59.0
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 1.9e-90 336.7 317 59.3
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 1.9e-90 336.7 317 59.3
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.9e-90 336.7 297 60.9
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 3.2e-90 335.9 314 58.9
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 4.2e-90 335.5 317 59.0
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 4.2e-90 335.5 317 59.0
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 2.7e-89 332.8 317 58.7
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 3.5e-89 332.4 297 61.6
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 4.6e-89 332.0 301 59.1
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 4.6e-89 332.0 300 57.0
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 7.9e-89 331.3 301 58.5
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 1.3e-88 330.5 315 58.4
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 5.1e-88 328.6 317 57.1
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 5.1e-88 328.6 299 58.5
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 8.7e-88 327.8 316 58.9
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 1.1e-87 327.4 318 58.5
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 7.4e-87 324.7 308 58.8
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 3.7e-86 322.4 309 58.3
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 1.1e-85 320.9 298 56.4
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 1.4e-85 320.5 313 56.5
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 1.8e-85 320.1 305 58.4
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 3.4e-84 315.8 297 59.3
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 7.6e-84 314.7 316 57.0
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 1.3e-83 313.9 305 57.0
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 3.8e-83 312.4 298 56.0
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 3.2e-82 309.3 310 55.8
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 1.6e-81 307.0 265 58.5
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 1.6e-81 307.0 266 60.9
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 2.1e-81 306.6 286 57.7
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 2.7e-81 306.2 299 56.9
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 1.3e-80 303.9 302 57.0
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 4.3e-79 298.9 297 59.3
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 3.7e-78 295.8 258 58.9
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 1.2e-76 290.8 274 58.8
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.4e-76 289.3 207 71.5
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 4.9e-75 285.4 299 53.8
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 4.2e-74 282.3 305 52.8
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 6.0e-73 278.5 279 55.2
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 1.3e-72 277.3 297 52.9
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 2.0e-68 263.5 204 65.7
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 1.9e-66 256.9 297 50.2
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.9e-66 256.9 303 50.2
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 1.2e-65 254.2 313 49.5
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 4.3e-63 245.7 256 55.1
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 2.9e-59 233.0 234 52.6
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.4e-53 214.2 302 44.7
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 8.0e-49 198.4 279 44.8
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 8.8e-48 194.9 286 42.0
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 2.6e-47 193.4 187 56.7
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 3.3e-47 193.0 306 42.5
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 8.2e-46 188.3 207 51.2
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 1.2e-44 184.5 300 42.0
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 2.0e-44 183.7 145 68.3
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 8.0e-41 171.8 264 42.0
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.6e-39 166.8 299 39.8
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 2.2e-38 163.7 132 65.9
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 1.6e-36 157.5 304 36.8
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.0e-36 157.1 274 39.4
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.1e-34 151.4 180 50.6
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 1.1e-34 151.4 120 66.7
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.3e-32 143.7 305 36.4
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 1.2e-31 141.4 127 62.2
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 7.0e-29 132.1 111 67.6
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.6e-28 131.0 178 42.7
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 7.7e-28 128.6 178 42.1
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 2.5e-26 123.6 125 48.8
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 1.4e-24 117.9 121 52.9
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 7.5e-23 112.1 160 43.8
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 1.4e-21 107.8 65 86.2
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 1.8e-21 107.5 97 58.8
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 7.8e-20 102.1 149 42.3
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.0e-19 101.7 125 48.8
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 5.0e-19 99.4 98 58.2
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 4.7e-17 92.8 66 60.6
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 9.8e-15 85.1 93 55.9
Nn3g19050 Nelumbo nucifera HOM05D000974 ORTHO05D007456 5.8e-07 59.3 89 43.8


User provided reference genes

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