Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 0.0e+00 2266.1 1335 100.0
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1235.7 1353 54.0
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1188.3 1351 51.7
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1158.7 1201 55.5
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1132.9 1191 54.5
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1119.4 1189 55.3
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1117.1 1155 55.1
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1114.8 1376 48.8
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1107.0 1197 53.2
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 0.0e+00 1102.8 1186 53.7
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 1100.9 1278 50.6
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1098.6 1218 52.8
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1083.6 1197 52.4
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1078.2 1346 49.1
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.8e-311 1072.8 1159 53.4
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 2.0e-309 1066.2 1194 52.7
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 2.0e-309 1066.2 1168 53.2
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 4.5e-309 1065.1 1201 51.5
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 7.6e-309 1064.3 1190 52.4
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 1.7e-308 1063.1 1152 52.7
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 1.1e-307 1060.4 1153 54.4
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 2.1e-306 1056.2 1189 50.8
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 2.2e-303 1046.2 1200 50.2
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 5.3e-302 1041.6 1183 50.4
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 5.3e-302 1041.6 1187 51.1
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 1.5e-301 1040.0 1193 51.0
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 5.9e-301 1038.1 1203 51.1
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 5.9e-301 1038.1 1162 51.7
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 3.8e-300 1035.4 1166 53.0
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 4.6e-298 1028.5 1203 50.8
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 1.0e-297 1027.3 1191 50.8
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.3e-296 1021.9 1187 52.3
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.7e-296 1021.5 1187 52.2
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 3.7e-295 1018.8 1192 49.7
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 4.1e-294 1015.4 1203 49.7
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 1.5e-293 1013.4 1186 51.9
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 7.7e-293 1011.1 1244 49.8
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 2.9e-292 1009.2 1141 52.1
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 3.8e-292 1008.8 1159 50.2
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 5.5e-291 1005.0 1200 51.5
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 7.9e-290 1001.1 1193 49.5
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 1.4e-289 1000.3 1204 49.3
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.8e-289 1000.0 1184 52.7
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 8.8e-289 997.7 1204 50.7
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.8e-287 991.9 1189 49.1
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 6.3e-287 991.5 1179 49.8
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.8e-286 989.9 1186 49.7
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 4.5e-285 985.3 1052 55.0
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.0e-284 984.2 1232 52.8
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 8.5e-284 981.1 1158 48.9
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 1.1e-283 980.7 1162 50.4
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.5e-283 980.3 1223 48.3
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 1.9e-283 979.9 1028 53.7
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 3.0e-281 972.6 1191 50.7
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 1.5e-280 970.3 1184 50.7
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 2.0e-280 969.9 1355 49.2
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 3.3e-280 969.1 1201 49.4
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 4.4e-280 968.8 1011 53.0
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 9.7e-280 967.6 1190 49.8
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.2e-279 966.5 1217 49.6
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 1.6e-277 960.3 1265 49.7
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.2e-275 952.6 1161 50.5
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 2.7e-274 949.5 1185 48.1
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 3.6e-274 949.1 1176 47.7
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.4e-273 947.2 1168 50.3
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 5.2e-273 945.3 1178 47.4
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 6.8e-273 944.9 1079 51.0
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 6.8e-273 944.9 1192 47.7
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 2.6e-272 943.0 1134 47.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 4.4e-272 942.2 1187 47.5
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 9.1e-270 934.5 1074 51.4
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 1.6e-269 933.7 1163 48.1
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 2.7e-269 932.9 1184 47.7
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 3.5e-269 932.6 1195 49.3
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 7.7e-269 931.4 1067 52.7
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.0e-268 931.0 1190 49.7
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 2.1e-266 923.3 1180 47.3
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 3.6e-266 922.5 1181 47.3
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 3.6e-266 922.5 1181 47.3
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 8.0e-266 921.4 1178 46.3
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.0e-265 919.5 1226 47.6
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.2e-264 917.5 1181 47.2
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 9.8e-264 914.4 1180 46.9
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.7e-263 913.7 1266 45.2
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.7e-260 903.7 1182 45.9
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 9.5e-259 897.9 1187 46.3
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.3e-255 887.5 1186 46.0
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 5.9e-253 878.6 1009 49.5
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.9e-243 847.0 1460 41.2
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 2.3e-233 813.5 1096 47.4
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.5e-227 794.3 983 48.2
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.5e-227 793.5 1210 42.3
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.7e-220 770.8 1205 41.5
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.6e-218 764.2 1195 44.4
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.0e-216 757.3 1195 42.6
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.7e-215 754.2 1017 45.7
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.2e-213 748.0 551 68.2
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 9.6e-211 738.4 1234 41.6
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 3.2e-206 723.4 1126 42.1
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 7.1e-206 722.2 1125 44.8
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 7.1e-206 722.2 1196 41.1
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 5.8e-200 702.6 511 67.9
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.5e-192 677.9 522 64.0
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.2e-182 643.7 559 59.7
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 7.9e-181 639.0 965 43.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.4e-153 548.5 1020 36.0
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 2.0e-144 518.1 1189 32.0
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 6.8e-140 503.1 555 49.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.3e-135 488.0 1300 30.7
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.3e-103 382.5 465 49.7
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 3.5e-88 331.3 1009 27.9
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.3e-79 302.0 244 63.5
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 2.4e-60 238.8 189 66.1
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 3.9e-55 221.5 178 65.7
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.1e-52 211.5 156 66.7
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 4.5e-51 208.0 131 78.6
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-44 184.5 234 44.0
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 3.5e-35 155.2 604 26.2
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.7e-29 135.2 105 60.0
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 7.0e-28 131.0 119 58.0
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.6e-25 121.3 102 61.8
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 1.0e-23 117.1 75 66.7
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 8.9e-23 114.0 222 34.2
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.4e-22 111.7 107 54.2
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 7.0e-20 104.4 121 49.6
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 3.5e-19 102.1 109 48.6
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 4.3e-17 95.1 80 62.5
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.0e-16 90.9 120 45.0
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.2e-15 88.2 125 44.0
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.5e-14 86.7 81 58.0
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 7.5e-14 84.3 92 51.1
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.4e-12 80.1 133 40.6
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 1.9e-09 69.7 72 47.2
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 1.2e-08 67.0 71 54.9
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 3.1e-07 62.4 156 30.8
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 4.0e-07 62.0 42 69.0
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 5.2e-07 61.6 77 37.7


User provided reference genes

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