Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 7.8e-25 116.3 58 100.0
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 2.8e-14 81.3 42 83.3
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 2.8e-14 81.3 48 79.2
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 3.6e-14 80.9 55 69.1
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 4.7e-14 80.5 48 75.0
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 6.2e-14 80.1 48 81.2
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 6.2e-14 80.1 48 81.2
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 8.1e-14 79.7 42 88.1
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.1e-13 79.3 56 73.2
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 1.1e-13 79.3 56 66.1
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 1.1e-13 79.3 49 75.5
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 1.4e-13 79.0 50 72.0
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 1.8e-13 78.6 48 77.1
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 1.8e-13 78.6 49 77.6
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 1.8e-13 78.6 48 77.1
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 2.3e-13 78.2 57 70.2
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 3.1e-13 77.8 50 76.0
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 3.1e-13 77.8 56 66.1
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 4.0e-13 77.4 50 74.0
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 5.2e-13 77.0 42 83.3
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 5.2e-13 77.0 42 83.3
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 5.2e-13 77.0 42 83.3
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 5.2e-13 77.0 42 83.3
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 6.8e-13 76.6 57 64.9
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 6.8e-13 76.6 42 81.0
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 6.8e-13 76.6 50 76.0
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 6.8e-13 76.6 53 69.8
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 8.9e-13 76.3 50 72.0
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 1.2e-12 75.9 43 76.7
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 1.2e-12 75.9 42 83.3
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 1.5e-12 75.5 48 75.0
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 2.0e-12 75.1 57 64.9
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 2.0e-12 75.1 42 78.6
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 2.0e-12 75.1 42 81.0
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 2.0e-12 75.1 53 67.9
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 2.6e-12 74.7 57 66.7
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 4.4e-12 73.9 41 82.9
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 4.4e-12 73.9 42 78.6
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 5.8e-12 73.6 56 66.1
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 9.8e-12 72.8 57 66.7
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 9.8e-12 72.8 57 66.7
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 9.8e-12 72.8 41 80.5
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 9.8e-12 72.8 48 68.8
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 1.3e-11 72.4 43 72.1
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 1.3e-11 72.4 48 75.0
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 1.7e-11 72.0 50 66.0
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 2.2e-11 71.6 57 63.2
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 4.9e-11 70.5 50 70.0
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 6.4e-11 70.1 48 68.8
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 6.4e-11 70.1 37 83.8
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 8.3e-11 69.7 49 65.3
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 8.3e-11 69.7 49 65.3
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 1.2e-09 65.9 41 73.2
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 2.1e-09 65.1 56 58.9
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 2.7e-09 64.7 41 73.2
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 2.7e-09 64.7 46 63.0
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 6.0e-09 63.5 42 64.3
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 7.8e-09 63.2 41 68.3
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 3.0e-08 61.2 31 80.6
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 6.6e-08 60.1 43 67.4
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 8.6e-08 59.7 40 70.0
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 8.1e-06 53.1 44 59.1


User provided reference genes

Program Settings