Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.3e-130 469.9 264 100.0
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 6.0e-64 248.4 213 68.5
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.7e-61 238.8 221 65.2
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 1.8e-60 236.9 218 64.7
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.5e-59 233.8 221 66.1
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 2.0e-59 233.4 220 64.5
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 5.8e-59 231.9 220 64.1
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.2e-58 229.9 227 63.9
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 3.7e-58 229.2 222 61.7
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 8.3e-58 228.0 215 61.4
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.4e-57 226.5 217 65.0
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 2.4e-57 226.5 218 63.3
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 5.4e-57 225.3 215 63.7
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 5.4e-57 225.3 217 64.1
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.7e-56 223.0 220 63.2
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.7e-56 223.0 217 62.7
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 3.5e-56 222.6 221 60.2
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 3.5e-56 222.6 222 59.9
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 7.8e-56 221.5 216 59.7
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 7.8e-56 221.5 220 61.8
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 7.8e-56 221.5 220 60.9
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.0e-55 221.1 220 61.4
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.0e-55 221.1 219 62.6
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 3.0e-55 219.5 219 61.2
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 3.0e-55 219.5 220 60.5
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 6.6e-55 218.4 219 62.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 6.6e-55 218.4 219 61.6
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.9e-54 216.9 222 60.4
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.9e-54 216.9 216 61.1
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.9e-54 216.9 219 61.6
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.5e-54 216.5 222 60.4
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 3.3e-54 216.1 222 60.4
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.6e-53 213.8 220 61.4
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 2.1e-53 213.4 252 56.7
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 3.6e-53 212.6 222 60.8
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.2e-53 211.8 220 59.1
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 6.2e-53 211.8 220 59.5
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 8.1e-53 211.5 220 60.9
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.1e-52 211.1 247 55.5
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.4e-52 210.7 253 56.5
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.3e-52 209.9 241 56.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.1e-52 209.5 221 58.8
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.0e-52 209.1 220 58.6
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 4.0e-52 209.1 211 60.7
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 4.0e-52 209.1 253 56.1
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 1.2e-51 207.6 219 59.8
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.2e-51 207.6 222 58.6
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.2e-51 207.6 218 60.1
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.5e-51 207.2 220 58.2
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.5e-51 207.2 219 58.9
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.5e-51 207.2 219 59.8
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.0e-51 206.8 223 59.6
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 2.0e-51 206.8 217 59.0
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 2.6e-51 206.5 249 55.4
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 2.6e-51 206.5 221 59.7
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 4.4e-51 205.7 217 59.4
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 5.8e-51 205.3 210 59.5
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.8e-51 205.3 222 57.2
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 2.2e-50 203.4 219 58.0
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 4.9e-50 202.2 217 58.5
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 6.4e-50 201.8 216 59.7
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 6.4e-50 201.8 225 57.8
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 6.4e-50 201.8 218 58.3
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 8.4e-50 201.4 216 57.9
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 8.4e-50 201.4 216 57.9
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 8.4e-50 201.4 217 58.1
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 8.4e-50 201.4 216 58.3
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 1.1e-49 201.1 211 59.2
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.1e-49 201.1 219 57.1
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 3.2e-49 199.5 217 58.5
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 3.2e-49 199.5 217 58.1
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 4.1e-49 199.1 210 58.1
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 5.4e-49 198.7 215 59.1
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 7.1e-49 198.4 216 58.3
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 7.1e-49 198.4 219 58.0
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 7.1e-49 198.4 215 58.1
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 9.2e-49 198.0 217 58.1
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 9.2e-49 198.0 214 57.5
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.2e-48 197.6 216 59.3
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.2e-48 197.6 207 60.9
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 7.8e-48 194.9 242 54.1
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.3e-47 194.1 244 54.1
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.3e-47 194.1 212 59.0
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 2.3e-47 193.4 216 56.5
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 3.9e-47 192.6 220 55.9
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.1e-46 191.0 224 54.0
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.1e-46 191.0 215 56.3
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.5e-46 189.9 247 51.0
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 9.6e-46 188.0 212 57.1
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 9.6e-46 188.0 215 58.1
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.2e-45 187.6 228 53.9
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.2e-45 187.6 222 54.1
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.6e-45 187.2 227 54.2
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 6.2e-45 185.3 218 50.9
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 2.4e-44 183.3 216 55.1
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 2.4e-44 183.3 268 49.6
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.4e-44 183.3 218 50.5
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 6.8e-44 181.8 218 55.5
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 6.8e-44 181.8 258 49.6
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 8.9e-44 181.4 226 54.0
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 8.9e-44 181.4 215 55.3
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 8.9e-44 181.4 215 54.0
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.2e-43 181.0 219 53.9
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.5e-43 180.6 218 55.0
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 3.4e-43 179.5 222 54.1
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 5.8e-43 178.7 222 53.6
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 9.9e-43 177.9 219 53.4
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.4e-41 174.1 118 79.7
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.4e-41 173.3 116 80.2
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.9e-39 166.0 120 73.3
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 6.6e-39 165.2 231 49.8
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 6.6e-39 165.2 121 75.2
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 8.7e-39 164.9 221 51.6
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 3.3e-38 162.9 218 50.5
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.4e-36 157.5 247 46.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.4e-36 156.8 149 64.4
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.5e-35 154.1 182 58.8
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 6.0e-32 142.1 174 55.2
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 7.9e-32 141.7 194 53.6
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.0e-31 139.8 140 60.0
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 5.1e-31 139.0 221 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.5e-30 137.5 249 41.4
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 6.2e-29 132.1 178 51.1
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 6.2e-29 132.1 205 49.8
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.5e-27 127.5 262 40.8
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 6.7e-23 112.1 166 47.6
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 7.4e-22 108.6 214 39.3
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 5.8e-19 99.0 61 83.6
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 2.9e-18 96.7 64 76.6
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.4e-17 94.4 70 71.4
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 1.0e-15 88.2 107 48.6
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.3e-15 87.0 130 44.6
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 4.3e-14 82.8 143 40.6
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 7.4e-14 82.0 54 79.6
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 9.6e-14 81.6 214 36.4
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 4.8e-13 79.3 145 41.4
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.4e-12 77.8 61 67.2
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 5.0e-10 69.3 175 34.3
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-09 68.2 132 40.2
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 1.6e-08 64.3 89 49.4
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 6.1e-08 62.4 87 48.3
DCAR_005855 Daucus carota HOM05D005135 ORTHO05D005810 7.9e-08 62.0 66 56.1
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 1.8e-07 60.8 179 34.1
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 1.8e-07 60.8 179 34.1
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 5.1e-07 59.3 70 52.9
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 2.5e-06 57.0 86 44.2


User provided reference genes

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