Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 6.6e-146 521.2 366 100.0
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 1.8e-82 310.5 364 73.6
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.9e-76 290.4 366 65.0
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.1e-75 287.0 363 64.7
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.8e-74 283.9 363 68.3
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 6.7e-74 282.0 347 69.5
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 8.8e-74 281.6 366 67.8
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.6e-73 280.0 363 67.5
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 3.3e-73 279.6 347 70.3
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 5.3e-71 272.3 347 60.8
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 2.0e-70 270.4 357 67.2
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 1.6e-67 260.8 321 70.4
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.8e-66 257.3 374 65.8
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 4.0e-66 256.1 341 67.4
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 2.0e-65 253.8 321 68.5
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.4e-65 253.1 322 68.6
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 5.7e-65 252.3 322 68.0
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 8.3e-64 248.4 371 62.0
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 8.3e-64 248.4 363 62.3
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 1.8e-63 247.3 363 63.4
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.4e-63 246.9 330 67.0
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.4e-63 246.9 330 67.0
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 2.7e-62 243.4 348 63.5
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 1.0e-61 241.5 362 63.5
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 1.7e-61 240.7 343 59.8
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 2.2e-61 240.4 322 65.5
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 2.9e-61 240.0 321 60.7
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 1.1e-60 238.0 363 65.0
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 1.9e-60 237.3 363 62.5
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 2.5e-60 236.9 363 62.0
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 9.5e-60 235.0 315 65.1
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 2.1e-59 233.8 321 60.4
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 3.6e-59 233.0 342 64.0
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 6.1e-59 232.3 321 64.8
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 6.8e-58 228.8 364 59.3
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 6.8e-58 228.8 323 65.9
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.4e-57 226.5 360 61.1
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.4e-57 226.5 322 65.8
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 5.7e-57 225.7 323 66.3
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.2e-56 223.8 323 65.0
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 6.3e-56 222.2 323 64.7
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 6.3e-56 222.2 323 65.3
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 6.3e-56 222.2 320 68.1
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 8.3e-56 221.9 323 65.3
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 8.3e-56 221.9 323 65.3
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 8.3e-56 221.9 326 61.7
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 8.3e-56 221.9 323 65.3
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 8.3e-56 221.9 326 61.7
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 8.3e-56 221.9 323 65.3
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 8.3e-56 221.9 322 65.2
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.4e-55 221.1 323 64.1
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 2.4e-55 220.3 268 73.5
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 3.1e-55 219.9 338 62.7
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 3.1e-55 219.9 322 64.3
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 5.4e-55 219.2 339 63.1
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 5.4e-55 219.2 321 59.2
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 1.2e-54 218.0 365 47.4
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.6e-54 217.6 364 58.5
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.0e-53 214.9 323 61.3
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 1.0e-53 214.9 365 54.0
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 1.7e-53 214.2 374 60.2
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 2.3e-53 213.8 321 53.6
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 5.0e-53 212.6 330 62.4
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 6.6e-53 212.2 363 60.6
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.5e-52 211.1 314 62.1
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.9e-52 210.7 360 59.4
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 4.3e-52 209.5 330 59.7
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 5.6e-52 209.1 377 56.8
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 7.3e-52 208.8 330 55.8
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 7.3e-52 208.8 363 58.7
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 8.0e-51 205.3 322 63.4
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 8.0e-51 205.3 365 58.4
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 4.0e-50 203.0 358 59.2
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 5.2e-50 202.6 374 57.0
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 5.2e-50 202.6 315 61.6
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 6.8e-50 202.2 330 56.1
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 6.8e-50 202.2 332 60.2
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.2e-49 201.4 345 59.4
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 1.5e-49 201.1 321 64.2
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 3.4e-49 199.9 322 62.1
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 4.4e-49 199.5 332 54.5
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 5.7e-49 199.1 346 49.1
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 7.5e-49 198.7 292 66.1
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 1.3e-48 198.0 362 58.3
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 1.7e-48 197.6 369 50.4
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.7e-48 197.6 320 60.9
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 3.7e-48 196.4 314 61.1
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 4.9e-48 196.1 367 57.5
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 4.9e-48 196.1 325 60.6
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 4.9e-48 196.1 374 57.0
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 8.3e-48 195.3 322 60.9
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.1e-47 194.9 321 60.1
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 4.1e-47 193.0 363 58.1
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 7.0e-47 192.2 360 45.0
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 3.5e-46 189.9 335 59.4
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 3.5e-46 189.9 335 59.4
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 4.6e-46 189.5 358 53.6
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 7.8e-46 188.7 336 60.4
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 1.0e-45 188.3 363 55.9
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.0e-45 188.3 289 64.7
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.7e-45 187.6 345 55.1
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 3.0e-45 186.8 302 62.6
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 6.6e-45 185.7 314 58.9
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 1.1e-44 184.9 302 62.3
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 3.3e-44 183.3 340 59.7
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 9.5e-44 181.8 371 52.3
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 6.2e-43 179.1 321 58.3
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.3e-42 177.2 322 58.7
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 4.0e-42 176.4 258 61.2
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 4.0e-42 176.4 258 61.2
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 5.2e-42 176.0 321 59.5
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.2e-41 174.9 308 57.5
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 2.0e-41 174.1 326 57.1
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 4.4e-41 172.9 256 61.3
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 9.8e-41 171.8 338 58.0
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 1.3e-40 171.4 362 54.1
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.9e-40 170.2 321 56.1
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 3.7e-40 169.9 342 55.3
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 4.9e-40 169.5 321 45.8
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 4.9e-40 169.5 350 48.3
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.9e-39 167.5 343 56.6
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.2e-39 166.8 320 53.4
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.6e-38 164.5 323 54.5
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.0e-38 164.1 321 57.0
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.7e-38 163.7 323 55.4
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 3.5e-38 163.3 249 69.1
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 7.8e-38 162.2 322 55.0
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 1.0e-37 161.8 342 55.3
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.3e-37 161.4 340 54.4
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 1.3e-37 161.4 279 54.1
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 1.7e-37 161.0 365 51.0
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 5.0e-37 159.5 322 57.5
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 8.6e-37 158.7 322 48.4
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 1.5e-36 157.9 335 55.2
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 1.5e-36 157.9 335 55.2
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.9e-36 157.5 321 56.1
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.5e-36 157.1 333 50.2
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 4.3e-36 156.4 323 55.4
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 9.5e-36 155.2 323 53.9
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 9.5e-36 155.2 335 54.9
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 1.2e-35 154.8 351 53.3
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.1e-35 154.1 335 53.7
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.6e-35 153.3 194 54.6
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 3.6e-35 153.3 349 53.9
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 3.6e-35 153.3 349 55.3
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 1.4e-34 151.4 335 53.7
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 3.1e-34 150.2 324 55.9
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 3.1e-34 150.2 322 54.7
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 6.8e-34 149.1 322 54.3
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 1.5e-33 147.9 363 44.4
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 1.5e-33 147.9 341 54.3
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 4.4e-33 146.4 326 47.5
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 5.8e-33 146.0 220 60.5
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 2.9e-32 143.7 321 54.8
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 3.7e-32 143.3 374 48.7
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 4.9e-32 142.9 331 53.5
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.9e-32 142.9 254 66.5
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 4.1e-31 139.8 337 52.2
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 4.1e-31 139.8 331 50.2
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 2.1e-30 137.5 315 40.3
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 6.0e-30 136.0 345 51.0
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 7.8e-30 135.6 335 54.3
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.0e-29 135.2 323 50.8
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.3e-29 134.8 369 50.1
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 1.7e-29 134.4 335 54.0
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 8.6e-29 132.1 323 56.0
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 3.6e-27 126.7 322 51.9
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 6.2e-27 125.9 312 51.9
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 6.2e-27 125.9 211 53.6
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 1.4e-26 124.8 365 48.2
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 1.4e-26 124.8 365 48.2
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 1.4e-26 124.8 365 48.2
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 5.2e-26 122.9 338 45.3
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 2.6e-25 120.6 221 47.5
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 2.6e-25 120.6 325 49.8
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 9.9e-25 118.6 164 55.5
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 3.8e-24 116.7 219 46.6
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 4.9e-24 116.3 230 63.5
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.1e-22 110.9 220 43.6
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.1e-20 105.1 92 63.0
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 5.6e-20 102.8 187 64.2
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 3.4e-17 93.6 320 47.5
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 7.8e-14 82.4 354 46.9
SEGI_36064 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 2.3e-13 80.9 136 68.4
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 8.7e-13 79.0 113 62.8
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.9e-12 77.8 85 52.9
ClCG06G013820 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.3e-08 65.1 85 49.4
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.1e-07 62.0 104 40.4


User provided reference genes

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