Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 2.6e-258 894.8 439 100.0
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 4.3e-216 754.6 440 82.7
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 4.3e-216 754.6 440 82.7
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 8.0e-215 750.4 440 82.5
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 8.0e-215 750.4 439 82.2
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 7.5e-213 743.8 439 80.4
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 6.4e-212 740.7 440 79.8
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 1.4e-211 739.6 440 80.7
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 1.2e-210 736.5 440 80.2
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 2.7e-210 735.3 440 81.1
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.5e-210 734.9 440 80.9
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 3.9e-209 731.5 443 79.0
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 5.0e-209 731.1 440 80.2
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 6.6e-209 730.7 440 80.2
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 8.6e-209 730.3 440 80.2
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 8.6e-209 730.3 439 80.2
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 4.3e-208 728.0 439 79.7
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 1.2e-207 726.5 440 80.2
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 6.2e-207 724.2 437 79.2
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 1.8e-206 722.6 440 79.5
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 2.3e-206 722.2 440 78.4
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 2.3e-206 722.2 440 78.4
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 2.3e-206 722.2 440 80.9
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 3.1e-206 721.8 440 78.9
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 3.1e-206 721.8 455 77.6
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 6.8e-206 720.7 440 78.9
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 1.2e-205 719.9 440 78.6
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 1.2e-205 719.9 440 78.9
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 3.4e-205 718.4 440 79.1
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 7.5e-205 717.2 440 79.1
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 7.5e-205 717.2 440 78.6
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 9.8e-205 716.8 440 79.1
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 2.2e-204 715.7 465 75.7
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 2.2e-204 715.7 440 78.0
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 3.7e-204 714.9 452 77.2
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 6.4e-204 714.1 440 77.7
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 6.4e-204 714.1 441 78.0
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 1.1e-203 713.4 440 77.7
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.4e-203 713.0 447 78.5
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 1.9e-203 712.6 440 79.1
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 2.4e-203 712.2 440 77.7
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 4.1e-203 711.4 452 76.8
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 4.1e-203 711.4 452 77.0
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 7.0e-203 710.7 454 76.9
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 7.0e-203 710.7 429 79.5
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 1.6e-202 709.5 441 77.1
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 2.1e-202 709.1 452 76.8
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 2.1e-202 709.1 440 78.4
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 4.6e-202 708.0 440 79.8
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 6.0e-202 707.6 445 75.7
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 6.0e-202 707.6 497 71.4
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 6.0e-202 707.6 440 77.5
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 1.0e-201 706.8 440 77.7
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 2.3e-201 705.7 467 74.1
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 6.6e-201 704.1 552 66.1
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 1.2e-199 699.9 441 77.3
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 6.2e-199 697.6 440 77.3
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 5.2e-198 694.5 473 74.0
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 8.9e-198 693.7 440 77.5
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 1.5e-197 693.0 445 76.2
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 1.5e-197 693.0 440 77.0
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 1.3e-196 689.9 440 76.6
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 2.9e-196 688.7 441 76.6
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 6.4e-196 687.6 447 75.4
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 1.1e-195 686.8 438 76.0
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 2.1e-194 682.6 440 76.1
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 1.3e-193 679.9 440 75.0
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 1.7e-193 679.5 440 76.4
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 6.6e-193 677.6 440 75.2
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 1.5e-192 676.4 443 74.7
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 6.2e-191 671.0 440 75.5
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 1.1e-190 670.2 440 74.8
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 2.4e-190 669.1 453 73.5
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 3.1e-190 668.7 440 75.0
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 8.9e-190 667.2 440 74.3
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 8.9e-190 667.2 406 81.0
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 7.6e-189 664.1 462 71.6
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 1.1e-187 660.2 438 73.1
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 1.1e-187 660.2 440 74.8
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 1.9e-187 659.4 399 78.4
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.4e-187 659.1 438 74.4
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 1.6e-186 656.4 440 74.1
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.1e-186 656.0 400 80.8
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 2.7e-186 655.6 403 78.7
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 6.2e-183 644.4 443 74.0
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 6.9e-182 641.0 444 72.7
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 6.0e-178 627.9 439 70.6
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 5.1e-177 624.8 400 76.5
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 9.0e-174 614.0 400 76.5
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 3.8e-172 608.6 431 68.4
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 1.4e-171 606.7 403 75.2
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 7.9e-170 600.9 357 79.8
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 3.3e-168 595.5 449 63.7
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 8.1e-167 590.9 509 59.3
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 7.6e-165 584.3 339 82.0
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 4.9e-156 555.1 417 69.1
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 7.1e-155 551.2 353 75.4
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 7.9e-146 521.2 319 81.5
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 5.7e-144 515.0 335 75.2
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 2.7e-138 496.1 332 72.3
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 4.7e-138 495.4 432 59.5
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 5.0e-132 475.3 310 71.9
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 6.5e-132 474.9 360 67.2
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.2e-117 427.6 265 77.4
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 3.4e-112 409.5 240 81.2
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 6.3e-103 378.6 243 75.7
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 5.1e-84 315.8 194 78.4
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.8e-81 307.4 199 75.9
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 4.3e-75 286.2 420 39.0
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.4e-73 280.4 175 75.4
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 2.4e-62 243.8 437 34.6
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.2e-55 220.7 189 64.0
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 2.3e-52 210.7 155 70.3
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 4.8e-50 203.0 121 80.2
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 6.0e-45 186.0 118 74.6
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 5.9e-32 142.9 104 65.4
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 4.1e-25 120.2 376 28.7
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 2.2e-23 114.4 69 81.2
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 3.8e-23 113.6 85 65.9
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 6.5e-23 112.8 317 29.7
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 6.5e-23 112.8 417 25.4
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 7.2e-22 109.4 85 64.7
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.6e-21 108.2 60 80.0
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 1.2e-16 92.0 65 69.2
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 3.8e-15 87.0 59 72.9
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 3.6e-13 80.5 56 80.4
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 2.2e-10 71.2 144 31.9
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 7.0e-09 66.2 41 70.7
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.7e-08 64.3 41 73.2
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 1.0e-07 62.4 41 78.0
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 6.5e-07 59.7 41 61.0
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 1.1e-06 58.9 410 21.7
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 2.5e-06 57.8 151 27.2
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 4.2e-06 57.0 152 27.6
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 5.5e-06 56.6 136 28.7
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 9.4e-06 55.8 121 27.3


User provided reference genes

Program Settings