Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020045 Daucus carota HOM05D002661 ORTHO05D002786 7.1e-102 374.0 200 100.0
DCAR_013866 Daucus carota HOM05D002661 ORTHO05D002786 7.0e-41 171.4 205 54.1
Lsat_1_v5_gn_2_10300 Lactuca sativa HOM05D002661 ORTHO05D002786 1.5e-22 110.5 198 42.9
QL02p011493 Quercus lobata HOM05D002661 ORTHO05D002786 1.1e-20 104.4 187 41.2
CSS0015710 Camellia sinensis var. sinensis HOM05D002661 ORTHO05D002786 5.2e-20 102.1 189 47.6
Phvul.009G016600 Phaseolus vulgaris HOM05D002661 ORTHO05D002786 2.0e-19 100.1 207 41.5
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 2.0e-19 100.1 219 41.6
Oeu046268.1 Olea europaea HOM05D000745 ORTHO05D000641 3.4e-19 99.4 212 41.0
arahy.Tifrunner.gnm1.ann1.TT5BBF Arachis hypogaea HOM05D002661 ORTHO05D002786 4.9e-18 95.5 207 40.1
arahy.Tifrunner.gnm1.ann1.T25A5J Arachis hypogaea HOM05D002661 ORTHO05D002786 1.4e-17 94.0 205 40.5
Dinv39512 Davidia involucrata HOM05D002661 ORTHO05D002786 1.9e-17 93.6 167 41.9
Potri.002G023000 Populus trichocarpa HOM05D002661 ORTHO05D002786 1.9e-17 93.6 191 39.3
Peaxi162Scf00400g00048 Petunia axillaris HOM05D002661 ORTHO05D002786 2.4e-17 93.2 204 38.7
Glyma.06G024700 Glycine max HOM05D002661 ORTHO05D002786 7.1e-17 91.7 197 44.7
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 7.1e-17 91.7 191 37.2
Cfa013943 Carpinus fangiana HOM05D002661 ORTHO05D002786 9.2e-17 91.3 192 41.1
Nn5g30157 Nelumbo nucifera HOM05D002661 ORTHO05D002786 9.2e-17 91.3 204 39.2
Ciclev10002504m.g Citrus clementina HOM05D002661 ORTHO05D002786 1.2e-16 90.9 195 37.9
Manes.05G148000 Manihot esculenta HOM05D002661 ORTHO05D002786 2.1e-16 90.1 192 43.8
Sabra05G0184300 Salix brachista HOM05D002661 ORTHO05D002786 2.1e-16 90.1 188 39.9
Lj4A25T51 Lonicera japonica HOM05D002661 ORTHO05D002786 2.7e-16 89.7 206 41.3
Peaxi162Scf00438g00717 Petunia axillaris HOM05D002661 ORTHO05D002786 2.7e-16 89.7 196 39.8
Psat5g013240 Pisum sativum HOM05D002661 ORTHO05D002786 2.7e-16 89.7 206 38.3
TAR381G1099 Trochodendron aralioides HOM05D002661 ORTHO05D002786 2.7e-16 89.7 206 36.9
Aqoxy4G02812 Aquilegia oxysepala HOM05D002661 ORTHO05D002786 3.5e-16 89.4 193 37.3
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 4.6e-16 89.0 190 41.6
MD08G1013500 Malus domestica HOM05D002661 ORTHO05D002786 4.6e-16 89.0 220 33.6
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 4.6e-16 89.0 216 39.8
COL.COLO4_26155 Corchorus olitorius HOM05D002661 ORTHO05D002786 6.0e-16 88.6 200 37.5
FAN20G0494 Fragaria x ananassa HOM05D002661 ORTHO05D002786 1.0e-15 87.8 197 40.6
MBI05_g15357_MAGBIO Magnolia biondii HOM05D002661 ORTHO05D002786 1.0e-15 87.8 202 37.6
Duzib041G0251 Durio zibethinus HOM05D002661 ORTHO05D002786 1.3e-15 87.4 187 38.5
Duzib093G0349 Durio zibethinus HOM05D002661 ORTHO05D002786 1.3e-15 87.4 187 41.7
Dinv31838 Davidia involucrata HOM05D002661 ORTHO05D002786 3.0e-15 86.3 187 41.2
FvH4_2g38540 Fragaria vesca HOM05D002661 ORTHO05D002786 3.9e-15 85.9 198 43.9
Cc10_g01730 Coffea canephora HOM05D002661 ORTHO05D002786 5.1e-15 85.5 190 37.9
Medtr3g113810 Medicago truncatula HOM05D002661 ORTHO05D002786 5.1e-15 85.5 204 38.7
HanXRQChr14g0430361 Helianthus annuus HOM05D002661 ORTHO05D002786 1.1e-14 84.3 186 37.1
TPR.G34544 Trifolium pratense HOM05D002661 ORTHO05D002786 1.5e-14 84.0 206 39.3
Thecc.08G043600 Theobroma cacao HOM05D002661 ORTHO05D002786 1.9e-14 83.6 187 42.2
Sabra02G0018800 Salix brachista HOM05D002661 ORTHO05D002786 2.5e-14 83.2 188 39.9
FAN15G3636 Fragaria x ananassa HOM05D002661 ORTHO05D002786 3.3e-14 82.8 198 42.9
FAN27G2774 Fragaria x ananassa HOM05D002661 ORTHO05D002786 3.3e-14 82.8 198 42.9
MD15G1013000 Malus domestica HOM05D002661 ORTHO05D002786 3.3e-14 82.8 195 37.4
Gorai.009G270100 Gossypium raimondii HOM05D002661 ORTHO05D002786 4.3e-14 82.4 188 34.6
RcHm_v2.0_Chr6g0302771 Rosa chinensis HOM05D002661 ORTHO05D002786 5.6e-14 82.0 199 42.7
Gohir.A05G257100 Gossypium hirsutum HOM05D002661 ORTHO05D002786 7.3e-14 81.6 188 34.6
Lalb_Chr11g0061941 Lupinus albus HOM05D002661 ORTHO05D002786 9.5e-14 81.3 207 38.6
CiPaw.07G150800 Carya illinoinensis HOM05D002661 ORTHO05D002786 1.6e-13 80.5 189 41.3
Ca_15484_v3 Cicer arietinum L. HOM05D002661 ORTHO05D002786 1.6e-13 80.5 234 33.3
Lalb_Chr14g0369851 Lupinus albus HOM05D002661 ORTHO05D002786 1.6e-13 80.5 212 37.3
Oeu054697.1 Olea europaea HOM05D002661 ORTHO05D002786 2.8e-13 79.7 202 37.1
Solyc04g081390.4 Solanum lycopersicum HOM05D002661 ORTHO05D002786 1.1e-12 77.8 194 35.1
VMungo1309G1856 Vigna mungo HOM05D002661 ORTHO05D002786 1.1e-12 77.8 203 39.4
CiPaw.08G066000 Carya illinoinensis HOM05D002661 ORTHO05D002786 1.4e-12 77.4 203 36.9
Glyma.04G024600 Glycine max HOM05D002661 ORTHO05D002786 1.4e-12 77.4 207 41.1
Potri.005G238500 Populus trichocarpa HOM05D002661 ORTHO05D002786 1.4e-12 77.4 208 35.6
PGSC0003DMG400009934 Solanum tuberosum HOM05D002661 ORTHO05D002786 1.4e-12 77.4 192 35.9
Cfa006970 Carpinus fangiana HOM05D002668 ORTHO05D003295 1.8e-12 77.0 185 37.3
DCAR_009925 Daucus carota HOM05D023667 ORTHO05D002786 5.2e-12 75.5 166 36.1
Gohir.D05G258600 Gossypium hirsutum HOM05D002661 ORTHO05D002786 6.8e-12 75.1 199 34.2
Gorai.010G004800 Gossypium raimondii HOM05D002661 ORTHO05D002786 6.8e-12 75.1 211 38.9
Gohir.D06G000400 Gossypium hirsutum HOM05D002661 ORTHO05D002786 1.5e-11 73.9 211 38.4
Dinv40084 Davidia involucrata HOM05D002661 ORTHO05D002786 2.0e-11 73.6 185 35.7
Actinidia28594 Actinidia chinensis HOM05D002661 ORTHO05D002786 2.6e-11 73.2 191 35.6
TWI56G0437 Tripterygium wilfordii HOM05D002661 ORTHO05D002786 2.6e-11 73.2 191 40.8
Gohir.A06G004600 Gossypium hirsutum HOM05D002661 ORTHO05D002786 3.4e-11 72.8 187 39.0
Prupe.1G366100 Prunus persica HOM05D002661 ORTHO05D002786 3.4e-11 72.8 196 33.2
PSO541G3760 Papaver somniferum HOM05D002661 ORTHO05D002786 4.4e-11 72.4 213 35.7
CSS0007330 Camellia sinensis var. sinensis HOM05D002661 ORTHO05D002786 9.9e-11 71.2 185 36.8
Solyc03g033550.3 Solanum lycopersicum HOM05D002661 ORTHO05D002786 1.3e-10 70.9 201 32.3
Actinidia15417 Actinidia chinensis HOM05D002661 ORTHO05D002786 1.7e-10 70.5 210 36.7
QL06p032701 Quercus lobata HOM05D002661 ORTHO05D002786 2.2e-10 70.1 190 38.9
QL12p007127 Quercus lobata HOM05D002661 ORTHO05D002786 2.2e-10 70.1 190 38.9
Actinidia37931 Actinidia chinensis HOM05D002661 ORTHO05D002786 2.9e-10 69.7 193 39.4
AUR62033833 Chenopodium quinoa HOM05D002661 ORTHO05D002786 2.9e-10 69.7 208 35.6
ClCG05G018310 Citrullus lanatus HOM05D002661 ORTHO05D002786 2.9e-10 69.7 200 35.0
Sopen03g006340 Solanum pennellii HOM05D002661 ORTHO05D002786 2.9e-10 69.7 201 32.3
Nitab4.5_0010507g0010 Nicotiana tabacum HOM05D002661 ORTHO05D002786 3.8e-10 69.3 190 31.6
EL10Ac1g02294 Beta vulgaris HOM05D002661 ORTHO05D002786 4.9e-10 68.9 217 34.1
TWI73G0139 Tripterygium wilfordii HOM05D002661 ORTHO05D002786 6.4e-10 68.6 190 33.7
Actinidia16982 Actinidia chinensis HOM05D002661 ORTHO05D002786 8.4e-10 68.2 178 36.0
RcHm_v2.0_Chr2g0099471 Rosa chinensis HOM05D002661 ORTHO05D002786 1.1e-09 67.8 191 36.1
Sopen02g028700 Solanum pennellii HOM05D002661 ORTHO05D002786 1.1e-09 67.8 194 33.0
AUR62035749 Chenopodium quinoa HOM05D002661 ORTHO05D002786 1.4e-09 67.4 207 35.7
PGSC0003DMG400022533 Solanum tuberosum HOM05D002661 ORTHO05D002786 1.9e-09 67.0 206 31.1
TAR625G0479 Trochodendron aralioides HOM05D002661 ORTHO05D002786 1.9e-09 67.0 167 38.9
CiPaw.08G131700 Carya illinoinensis HOM05D002661 ORTHO05D002786 2.4e-09 66.6 193 34.7
CDE05G2569 Ceratophyllum demersum HOM05D002661 ORTHO05D002786 2.4e-09 66.6 217 34.6
CANSAT25G0605 Cannabis sativa HOM05D002661 ORTHO05D002786 3.2e-09 66.2 222 35.6
ECA238G4826 Erigeron canadensis HOM05D002661 ORTHO05D002786 3.2e-09 66.2 145 42.8
Cpa.g.sc6.246 Carica papaya HOM05D002661 ORTHO05D002786 7.1e-09 65.1 188 31.9
MSTRG.1199 Avicennia marina HOM05D002661 ORTHO05D002786 9.2e-09 64.7 207 34.8
PSO675G6292 Papaver somniferum HOM05D002661 ORTHO05D002786 1.2e-08 64.3 157 34.4
SGA_v2.0_scaffold92G28240 Striga asiatica HOM05D002661 ORTHO05D002786 1.6e-08 63.9 191 35.1
CAN.G1735.2 Capsicum annuum HOM05D002661 ORTHO05D002786 2.7e-08 63.2 199 31.2
COL.COLO4_21913 Corchorus olitorius HOM05D002661 ORTHO05D002786 2.7e-08 63.2 213 31.0
MELO3C003756.2 Cucumis melo HOM05D002661 ORTHO05D002786 2.7e-08 63.2 194 32.5
vmacro21919 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 2.7e-08 63.2 184 33.2
CAN.G311.24 Capsicum annuum HOM05D002661 ORTHO05D002786 3.5e-08 62.8 212 32.5
Migut.C00825 Erythranthe guttata HOM05D002661 ORTHO05D002786 3.5e-08 62.8 211 32.7
Peaxi162Scf00083g00420 Petunia axillaris HOM05D002661 ORTHO05D002786 3.5e-08 62.8 199 31.2
Peaxi162Scf00083g00513 Petunia axillaris HOM05D002661 ORTHO05D002786 3.5e-08 62.8 199 31.2
CDE05G2590 Ceratophyllum demersum HOM05D002661 ORTHO05D002786 4.6e-08 62.4 217 33.6
Sed0015402 Sechium edule HOM05D002661 ORTHO05D002786 4.6e-08 62.4 201 32.8
A02p20180 Brassica napus HOM05D002661 ORTHO05D002786 6.0e-08 62.0 196 34.2
BolC6t40006H Brassica oleracea HOM05D002661 ORTHO05D002786 6.0e-08 62.0 196 38.3
Nitab4.5_0003271g0010 Nicotiana tabacum HOM05D002661 ORTHO05D002786 6.0e-08 62.0 199 31.7
Atru.chr13.302 Acer truncatum HOM05D002661 ORTHO05D002786 7.8e-08 61.6 219 33.8
C06p49670 Brassica napus HOM05D002661 ORTHO05D002786 1.0e-07 61.2 212 35.8
Sopen04g035000 Solanum pennellii HOM05D002661 ORTHO05D002786 1.0e-07 61.2 160 33.8
Thecc.01G019200 Theobroma cacao HOM05D002661 ORTHO05D002786 1.3e-07 60.8 188 32.4
Hma1.2p1_0956F.1_g241350 Hydrangea macrophylla HOM05D002661 ORTHO05D002786 1.7e-07 60.5 99 42.4
Hma1.2p1_2239F.1_g317813 Hydrangea macrophylla HOM05D002661 ORTHO05D002786 1.7e-07 60.5 99 42.4
SalBow7G2684 Salvia bowleyana HOM05D002661 ORTHO05D002786 1.7e-07 60.5 176 34.1
A07p41250 Brassica napus HOM05D002661 ORTHO05D002786 3.0e-07 59.7 212 35.4
BraA07t31660Z Brassica rapa HOM05D002661 ORTHO05D002786 3.0e-07 59.7 212 35.4
Sc15g0005030 Simmondsia chinensis HOM05D002661 ORTHO05D002786 3.0e-07 59.7 191 34.6
FAN26G1121 Fragaria x ananassa HOM05D002661 ORTHO05D002786 3.9e-07 59.3 189 30.7
Eucgr.F00599 Eucalyptus grandis HOM05D002661 ORTHO05D002786 5.1e-07 58.9 214 32.7
Eucgr.F01646 Eucalyptus grandis HOM05D002661 ORTHO05D002786 5.1e-07 58.9 201 32.3
MSTRG.2712 Avicennia marina HOM05D002661 ORTHO05D002786 6.6e-07 58.5 156 31.4
Nitab4.5_0006119g0020 Nicotiana tabacum HOM05D002661 ORTHO05D002786 6.6e-07 58.5 191 34.0
Prupe.7G167800 Prunus persica HOM05D002668 ORTHO05D003295 6.6e-07 58.5 136 33.1
GSVIVG01018786001 Vitis vinifera HOM05D002668 ORTHO05D003295 6.6e-07 58.5 139 36.7
Thhalv10019714m.g Eutrema salsugineum HOM05D002661 ORTHO05D002786 8.7e-07 58.2 201 36.3
FAN28G1441 Fragaria x ananassa HOM05D002661 ORTHO05D002786 8.7e-07 58.2 208 29.3
Lj4A218T51 Lonicera japonica HOM05D002661 ORTHO05D002786 8.7e-07 58.2 181 29.8
Peaxi162Scf00034g02717 Petunia axillaris HOM05D002661 ORTHO05D002786 8.7e-07 58.2 138 36.2
Manes.02G104300 Manihot esculenta HOM05D002661 ORTHO05D002786 1.1e-06 57.8 188 34.0
BcaC08g47048 Brassica carinata HOM05D002661 ORTHO05D002786 1.5e-06 57.4 186 37.1
Lj2g0022128 Lotus japonicus HOM05D002661 ORTHO05D002786 1.5e-06 57.4 192 33.9
TWI36G0177 Tripterygium wilfordii HOM05D002661 ORTHO05D002786 1.5e-06 57.4 222 38.7
THA.LOC104811385 Tarenaya hassleriana HOM05D002661 ORTHO05D002786 3.3e-06 56.2 207 30.9
AUR62029460 Chenopodium quinoa HOM05D002661 ORTHO05D002786 4.3e-06 55.8 192 32.8
Nitab4.5_0000438g0050 Nicotiana tabacum HOM05D002661 ORTHO05D002786 5.6e-06 55.5 161 33.5
Nitab4.5_0006286g0080 Nicotiana tabacum HOM05D002661 ORTHO05D002786 5.6e-06 55.5 213 30.5
Sp5g30840 Schrenkiella parvula HOM05D002661 ORTHO05D002786 5.6e-06 55.5 198 36.4
Sc16g0002170 Simmondsia chinensis HOM05D002661 ORTHO05D002786 5.6e-06 55.5 125 36.0
ATR0481G008 Amborella trichopoda HOM05D002661 ORTHO05D002786 7.3e-06 55.1 127 33.9
Haze_03766 Corylus avellana HOM05D002661 ORTHO05D002786 7.3e-06 55.1 176 31.8
HanXRQChr09g0256611 Helianthus annuus HOM05D002661 ORTHO05D002786 9.6e-06 54.7 191 33.0


User provided reference genes

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