Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020001 Daucus carota HOM05D000098 ORTHO05D024984 1.7e-38 162.2 82 100.0
CSS0011342 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 1.0e-14 83.2 61 65.6
DCAR_009579 Daucus carota HOM05D000098 ORTHO05D024984 8.7e-14 80.1 57 68.4
Actinidia10348 Actinidia chinensis HOM05D000098 ORTHO05D000523 3.3e-13 78.2 55 65.5
Actinidia30798 Actinidia chinensis HOM05D000098 ORTHO05D000523 7.4e-13 77.0 55 65.5
Cc00_g22250 Coffea canephora HOM05D000098 ORTHO05D000523 1.6e-12 75.9 55 65.5
Dinv44810 Davidia involucrata HOM05D000098 ORTHO05D000523 2.8e-12 75.1 61 60.7
Gohir.A05G223300 Gossypium hirsutum HOM05D000098 ORTHO05D000523 3.7e-12 74.7 55 63.6
Lj4C96G8 Lonicera japonica HOM05D000098 ORTHO05D000523 4.8e-12 74.3 62 58.1
CSS0038813 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 8.2e-12 73.6 61 57.4
Dinv07078 Davidia involucrata HOM05D000098 ORTHO05D000523 1.4e-11 72.8 61 57.4
Thecc.08G101300 Theobroma cacao HOM05D000098 ORTHO05D000523 1.4e-11 72.8 55 58.2
CSS0039101 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 2.4e-11 72.0 61 55.7
Nitab4.5_0003374g0040 Nicotiana tabacum HOM05D000098 ORTHO05D000523 2.4e-11 72.0 55 63.6
Nitab4.5_0009374g0010 Nicotiana tabacum HOM05D000098 ORTHO05D000523 2.4e-11 72.0 55 63.6
Duzib116G0514 Durio zibethinus HOM05D000098 ORTHO05D000523 3.1e-11 71.6 55 61.8
Duzib093G0542 Durio zibethinus HOM05D000098 ORTHO05D000523 5.3e-11 70.9 55 60.0
Rhsim07G0205300 Rhododendron simsii HOM05D000098 ORTHO05D000523 5.3e-11 70.9 63 60.3
COL.COLO4_12001 Corchorus olitorius HOM05D000098 ORTHO05D000523 9.0e-11 70.1 55 56.4
DCAR_027953 Daucus carota HOM05D000513 ORTHO05D003825 1.2e-10 69.7 58 63.8
FAN18G1793 Fragaria x ananassa HOM05D000098 ORTHO05D000523 1.2e-10 69.7 61 57.4
Duzib041G0078 Durio zibethinus HOM05D000098 ORTHO05D000523 1.5e-10 69.3 55 58.2
TAR376G0594 Trochodendron aralioides HOM05D000098 ORTHO05D000523 1.5e-10 69.3 55 60.0
FvH4_5g36400 Fragaria vesca HOM05D000098 ORTHO05D000523 2.0e-10 68.9 62 58.1
FAN08G2808 Fragaria x ananassa HOM05D000098 ORTHO05D000523 2.0e-10 68.9 62 58.1
FAN13G3004 Fragaria x ananassa HOM05D000098 ORTHO05D000523 2.0e-10 68.9 62 58.1
Gorai.009G233600 Gossypium raimondii HOM05D000098 ORTHO05D000523 2.6e-10 68.6 55 60.0
Gohir.A05G265800 Gossypium hirsutum HOM05D000098 ORTHO05D000523 5.8e-10 67.4 55 54.5
Gohir.D05G267900 Gossypium hirsutum HOM05D000098 ORTHO05D000523 5.8e-10 67.4 55 54.5
Gorai.009G280000 Gossypium raimondii HOM05D000098 ORTHO05D000523 5.8e-10 67.4 55 54.5
Potri.002G101200 Populus trichocarpa HOM05D000098 ORTHO05D000523 5.8e-10 67.4 45 62.2
Potri.002G101300 Populus trichocarpa HOM05D000098 ORTHO05D000523 5.8e-10 67.4 45 62.2
Gohir.D05G226000 Gossypium hirsutum HOM05D000098 ORTHO05D000523 7.6e-10 67.0 55 58.2
GSVIVG01009090001 Vitis vinifera HOM05D000098 ORTHO05D000523 7.6e-10 67.0 50 60.0
Hma1.2p1_1180F.1_g264700 Hydrangea macrophylla HOM05D000098 ORTHO05D000523 1.0e-09 66.6 57 61.4
Sabra02G0079400 Salix brachista HOM05D000098 ORTHO05D000523 1.0e-09 66.6 45 64.4
Lsat_1_v5_gn_9_73760 Lactuca sativa HOM05D000098 ORTHO05D000523 1.3e-09 66.2 55 56.4
Os04g0545600 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D000523 1.3e-09 66.2 55 52.7
TAR628G0866 Trochodendron aralioides HOM05D000098 ORTHO05D000523 1.3e-09 66.2 54 55.6
vmacro04708 Vaccinium macrocarpon HOM05D000098 ORTHO05D000523 1.3e-09 66.2 59 57.6
RcHm_v2.0_Chr7g0238371 Rosa chinensis HOM05D000098 ORTHO05D000523 1.7e-09 65.9 62 56.5
ClCG11G014350 Citrullus lanatus HOM05D000098 ORTHO05D000523 2.9e-09 65.1 56 57.1
CsaV3_3G047750 Cucumis sativus L. HOM05D000098 ORTHO05D000523 2.9e-09 65.1 56 58.9
FAN04G1745 Fragaria x ananassa HOM05D000098 ORTHO05D000523 2.9e-09 65.1 62 56.5
Manes.02G148700 Manihot esculenta HOM05D000098 ORTHO05D000523 2.9e-09 65.1 56 55.4
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 2.9e-09 65.1 55 58.2
ECA232G0829 Erigeron canadensis HOM05D000098 ORTHO05D000523 3.8e-09 64.7 55 52.7
PSO675G5552 Papaver somniferum HOM05D000098 ORTHO05D000523 3.8e-09 64.7 64 51.6
Ciclev10002591m.g Citrus clementina HOM05D000098 ORTHO05D000523 5.0e-09 64.3 62 50.0
Nn5g29986 Nelumbo nucifera HOM05D000098 ORTHO05D000523 5.0e-09 64.3 55 54.5
vmacro21286 Vaccinium macrocarpon HOM05D000098 ORTHO05D000523 5.0e-09 64.3 61 52.5
Zm00001eb186300 Zea mays HOM05D000098 ORTHO05D000523 5.0e-09 64.3 55 56.4
Gorai.010G037400 Gossypium raimondii HOM05D000098 ORTHO05D000523 6.5e-09 63.9 56 57.1
Sopen04g029710 Solanum pennellii HOM05D000098 ORTHO05D000523 6.5e-09 63.9 37 75.7
PGSC0003DMG400030839 Solanum tuberosum HOM05D000098 ORTHO05D000523 6.5e-09 63.9 37 75.7
MELO3C003547.2 Cucumis melo HOM05D000098 ORTHO05D000523 1.1e-08 63.2 56 55.4
Phvul.010G049200 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 1.1e-08 63.2 55 56.4
Psat5g050400 Pisum sativum HOM05D000098 ORTHO05D000523 1.1e-08 63.2 64 53.1
QL02p002286 Quercus lobata HOM05D000098 ORTHO05D000523 1.1e-08 63.2 55 54.5
Solyc04g074740.4 Solanum lycopersicum HOM05D000098 ORTHO05D000523 1.1e-08 63.2 37 75.7
ATR0684G124 Amborella trichopoda HOM05D000098 ORTHO05D000523 1.4e-08 62.8 54 53.7
CiPaw.16G032700 Carya illinoinensis HOM05D000098 ORTHO05D000523 1.4e-08 62.8 43 65.1
PSO541G5979 Papaver somniferum HOM05D000098 ORTHO05D000523 1.4e-08 62.8 64 51.6
Zm00001eb249210 Zea mays HOM05D000098 ORTHO05D000523 1.4e-08 62.8 54 55.6
Gohir.D06G033900 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.9e-08 62.4 56 55.4
HanXRQChr09g0248931 Helianthus annuus HOM05D000098 ORTHO05D000523 1.9e-08 62.4 52 55.8
Gohir.A06G033000 Gossypium hirsutum HOM05D000098 ORTHO05D000523 2.5e-08 62.0 56 58.9
HPP92_001534 Vanilla planifolia HOM05D000098 ORTHO05D000523 3.2e-08 61.6 48 56.2
CAN.G1173.4 Capsicum annuum HOM05D000098 ORTHO05D000523 4.2e-08 61.2 55 58.2
Cfa017896 Carpinus fangiana HOM05D000098 ORTHO05D000523 4.2e-08 61.2 53 60.4
CDE02G0823 Ceratophyllum demersum HOM05D000098 ORTHO05D000523 4.2e-08 61.2 48 64.6
CiPaw.15G045400 Carya illinoinensis HOM05D000098 ORTHO05D000523 5.5e-08 60.8 37 70.3
Lj3g0023008 Lotus japonicus HOM05D000098 ORTHO05D000523 5.5e-08 60.8 49 55.1
Oeu029733.1 Olea europaea HOM05D000098 ORTHO05D000523 5.5e-08 60.8 57 59.6
arahy.Tifrunner.gnm1.ann1.FZM120 Arachis hypogaea HOM05D000098 ORTHO05D000523 7.1e-08 60.5 58 53.4
Ca_16035_v3 Cicer arietinum L. HOM05D000098 ORTHO05D000523 7.1e-08 60.5 55 56.4
AUR62018977 Chenopodium quinoa HOM05D000098 ORTHO05D024984 9.3e-08 60.1 44 61.4
Sed0008574 Sechium edule HOM05D000098 ORTHO05D000523 1.2e-07 59.7 56 51.8
TWI36G1775 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 1.2e-07 59.7 52 51.9
Manes.18G063300 Manihot esculenta HOM05D000098 ORTHO05D000523 1.6e-07 59.3 51 58.8
Sed0025033 Sechium edule HOM05D000098 ORTHO05D000523 1.6e-07 59.3 56 53.6
TPR.G7350 Trifolium pratense HOM05D000098 ORTHO05D000523 2.1e-07 58.9 54 50.0
Atru.chr13.1113 Acer truncatum HOM05D000098 ORTHO05D000523 2.7e-07 58.5 64 50.0
Lalb_Chr23g0270231 Lupinus albus HOM05D000098 ORTHO05D000523 2.7e-07 58.5 53 52.8
Lalb_Chr23g0270331 Lupinus albus HOM05D000098 ORTHO05D000523 2.7e-07 58.5 53 52.8
ECA246G2436 Erigeron canadensis HOM05D000098 ORTHO05D000523 3.5e-07 58.2 35 71.4
MD08G1189500 Malus domestica HOM05D000098 ORTHO05D000523 3.5e-07 58.2 57 50.9
PGSC0003DMG400003448 Solanum tuberosum HOM05D000098 ORTHO05D000523 3.5e-07 58.2 58 44.8
arahy.Tifrunner.gnm1.ann1.X7C896 Arachis hypogaea HOM05D000098 ORTHO05D000523 4.6e-07 57.8 57 50.9
Glyma.02G209500 Glycine max HOM05D000098 ORTHO05D000523 4.6e-07 57.8 55 56.4
Gohir.A03G060400 Gossypium hirsutum HOM05D000098 ORTHO05D000523 4.6e-07 57.8 48 54.2
PGR031G0178 Punica granatum HOM05D000098 ORTHO05D000523 4.6e-07 57.8 56 50.0
FvH4_6g39940 Fragaria vesca HOM05D000098 ORTHO05D001228 6.1e-07 57.4 55 50.9
Glyma.07G115000 Glycine max HOM05D000098 ORTHO05D000523 6.1e-07 57.4 43 55.8
Phvul.009G033500 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 6.1e-07 57.4 55 50.9
Solyc10g037880.3 Solanum lycopersicum HOM05D000098 ORTHO05D000523 6.1e-07 57.4 58 44.8
CSS0020605 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 7.9e-07 57.0 52 51.9
Medtr8g007035 Medicago truncatula HOM05D000098 ORTHO05D000523 7.9e-07 57.0 50 52.0
Oeu024818.1 Olea europaea HOM05D000098 ORTHO05D000523 7.9e-07 57.0 49 53.1
Sed0025839 Sechium edule HOM05D000098 ORTHO05D000523 7.9e-07 57.0 38 60.5
Sc01g0000860 Simmondsia chinensis HOM05D000098 ORTHO05D000523 7.9e-07 57.0 61 49.2
Glyma.03G109900 Glycine max HOM05D000098 ORTHO05D000523 1.0e-06 56.6 55 50.9
MD15G1377000 Malus domestica HOM05D000098 ORTHO05D000523 1.0e-06 56.6 58 50.0
Peaxi162Scf00103g00071 Petunia axillaris HOM05D000098 ORTHO05D000523 1.0e-06 56.6 52 51.9
Prupe.1G523700 Prunus persica HOM05D000098 ORTHO05D000523 1.0e-06 56.6 63 52.4
Zm00001eb075000 Zea mays HOM05D000098 ORTHO05D000523 1.0e-06 56.6 55 47.3
CANSAT25G0481 Cannabis sativa HOM05D000098 ORTHO05D000523 1.3e-06 56.2 56 46.4
Glyma.06G100300 Glycine max HOM05D000098 ORTHO05D000523 1.3e-06 56.2 61 47.5
MD02G1199200 Malus domestica HOM05D000098 ORTHO05D001228 1.3e-06 56.2 66 39.4
VMungo0647G0472 Vigna mungo HOM05D000098 ORTHO05D000523 1.3e-06 56.2 55 49.1
Atru.chr5.118 Acer truncatum HOM05D000098 ORTHO05D000523 1.8e-06 55.8 45 55.6
Lsat_1_v5_gn_6_104220 Lactuca sativa HOM05D000098 ORTHO05D000523 1.8e-06 55.8 55 52.7
PSO700G0151 Papaver somniferum HOM05D000098 ORTHO05D000523 1.8e-06 55.8 45 51.1
Phvul.008G177100 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 1.8e-06 55.8 56 51.8
VMungo0331G0924 Vigna mungo HOM05D000098 ORTHO05D000523 1.8e-06 55.8 43 55.8
AUR62027817 Chenopodium quinoa HOM05D000098 ORTHO05D024984 2.3e-06 55.5 37 67.6
Sopen10g011820 Solanum pennellii HOM05D000098 ORTHO05D000523 2.3e-06 55.5 58 44.8
BcaB02g08179 Brassica carinata HOM05D000098 ORTHO05D000523 3.0e-06 55.1 67 43.3
A04p01730 Brassica napus HOM05D000098 ORTHO05D000523 3.0e-06 55.1 57 45.6
BraA04t15897Z Brassica rapa HOM05D000098 ORTHO05D000523 3.0e-06 55.1 57 45.6
Cpa.g.sc22.46 Carica papaya HOM05D000098 ORTHO05D000523 3.0e-06 55.1 50 52.0
Eucgr.B00045 Eucalyptus grandis HOM05D000098 ORTHO05D000523 3.0e-06 55.1 37 59.5
FAN14G2804 Fragaria x ananassa HOM05D000098 ORTHO05D001228 3.0e-06 55.1 55 49.1
Glyma.14G177600 Glycine max HOM05D000098 ORTHO05D000523 3.0e-06 55.1 55 50.9
Gohir.A09G248800 Gossypium hirsutum HOM05D000098 ORTHO05D000523 3.0e-06 55.1 48 52.1
Gohir.D09G249750 Gossypium hirsutum HOM05D000098 ORTHO05D000523 3.0e-06 55.1 48 52.1
Gorai.006G274100 Gossypium raimondii HOM05D000098 ORTHO05D000523 3.0e-06 55.1 48 52.1
Gorai.008G241600 Gossypium raimondii HOM05D000098 ORTHO05D001228 3.0e-06 55.1 55 49.1
Medtr8g007020 Medicago truncatula HOM05D000098 ORTHO05D000523 3.0e-06 55.1 49 51.0
Os06g0218600 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D000523 3.0e-06 55.1 55 49.1
Os07g0542900 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D000523 3.0e-06 55.1 54 50.0
Hund16886 Selenicereus undatus HOM05D000098 ORTHO05D000523 3.0e-06 55.1 54 51.9
Aqoxy6G00708 Aquilegia oxysepala HOM05D000098 ORTHO05D000523 3.9e-06 54.7 57 45.6
EL10Ac1g01141 Beta vulgaris HOM05D000098 ORTHO05D000523 3.9e-06 54.7 54 51.9
Duzib133G1157 Durio zibethinus HOM05D000098 ORTHO05D000523 3.9e-06 54.7 49 51.0
HanXRQChr03g0087431 Helianthus annuus HOM05D000098 ORTHO05D001228 3.9e-06 54.7 55 49.1
Lalb_Chr07g0195361 Lupinus albus HOM05D000098 ORTHO05D000523 3.9e-06 54.7 50 56.0
Medtr3g099540 Medicago truncatula HOM05D000098 ORTHO05D000523 3.9e-06 54.7 53 47.2
TWI56G0930 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 3.9e-06 54.7 55 49.1
Medtr3g099580 Medicago truncatula HOM05D000098 ORTHO05D000523 5.1e-06 54.3 51 51.0
Rhsim07G0097700 Rhododendron simsii HOM05D000098 ORTHO05D001228 5.1e-06 54.3 49 53.1
THA.LOC104802497 Tarenaya hassleriana HOM05D000098 ORTHO05D000523 5.1e-06 54.3 49 51.0
Aa31LG1G26330 Aethionema arabicum HOM05D000098 ORTHO05D000523 6.7e-06 53.9 55 45.5
C04p32380 Brassica napus HOM05D000098 ORTHO05D000523 6.7e-06 53.9 57 43.9
BolC4t24786H Brassica oleracea HOM05D000098 ORTHO05D000523 6.7e-06 53.9 57 43.9
ClCG08G011320 Citrullus lanatus HOM05D000098 ORTHO05D000523 6.7e-06 53.9 51 49.0
MELO3C011049.2 Cucumis melo HOM05D000098 ORTHO05D000523 6.7e-06 53.9 46 54.3
FAN01G1202 Fragaria x ananassa HOM05D000098 ORTHO05D000523 6.7e-06 53.9 44 56.8
Gohir.D03G105600 Gossypium hirsutum HOM05D000098 ORTHO05D000523 6.7e-06 53.9 48 52.1
Gorai.003G111800 Gossypium raimondii HOM05D000098 ORTHO05D000523 6.7e-06 53.9 48 52.1
MBI02_g10703_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000523 6.7e-06 53.9 44 54.5
THA.LOC104817186 Tarenaya hassleriana HOM05D000098 ORTHO05D000523 6.7e-06 53.9 53 43.4
MSTRG.22170 Avicennia marina HOM05D000098 ORTHO05D000523 8.7e-06 53.5 54 48.1
Cpa.g.sc36.187 Carica papaya HOM05D000098 ORTHO05D000523 8.7e-06 53.5 53 52.8
MELO3C005599.2 Cucumis melo HOM05D000098 ORTHO05D001228 8.7e-06 53.5 57 45.6
FAN02G1254 Fragaria x ananassa HOM05D000098 ORTHO05D001228 8.7e-06 53.5 55 47.3
Gohir.D12G225600 Gossypium hirsutum HOM05D000098 ORTHO05D001228 8.7e-06 53.5 55 47.3
Nitab4.5_0000028g0460 Nicotiana tabacum HOM05D000098 ORTHO05D000523 8.7e-06 53.5 54 48.1
SalBow1G4410 Salvia bowleyana HOM05D000098 ORTHO05D001228 8.7e-06 53.5 47 48.9
SalBow7G1306 Salvia bowleyana HOM05D000098 ORTHO05D000523 8.7e-06 53.5 49 53.1


User provided reference genes

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