Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 2.1e-172 609.0 315 100.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.4e-98 362.1 310 60.0
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 9.2e-96 354.4 312 59.6
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.1e-93 347.4 314 58.6
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 3.3e-93 345.9 298 62.1
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.3e-93 345.5 296 61.5
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 2.1e-92 343.2 313 58.1
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.8e-92 342.8 311 58.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-91 340.5 325 56.9
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.2e-90 337.4 315 58.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.4e-90 335.9 299 57.2
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 2.2e-89 333.2 316 58.2
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.2e-89 333.2 313 54.6
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 3.7e-89 332.4 299 56.9
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 6.4e-89 331.6 323 57.9
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 8.3e-89 331.3 318 56.0
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.4e-88 330.5 299 56.9
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.4e-88 330.5 323 57.3
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.9e-88 330.1 313 55.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 4.1e-88 328.9 314 54.5
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.2e-87 327.4 316 57.3
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.6e-87 327.0 291 59.8
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.1e-87 326.6 316 55.4
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 3.5e-87 325.9 280 62.1
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 4.6e-87 325.5 315 56.2
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 6.0e-87 325.1 323 57.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.7e-86 323.6 315 56.2
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.7e-86 323.6 318 55.0
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 3.0e-86 322.8 297 56.9
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 6.6e-86 321.6 315 54.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 8.6e-86 321.2 299 56.5
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-85 320.1 311 55.6
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 2.5e-85 319.7 309 53.1
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 4.3e-85 318.9 311 55.3
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 9.5e-85 317.8 309 53.7
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 2.8e-84 316.2 311 53.1
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 3.6e-84 315.8 297 57.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.8e-83 313.5 314 52.9
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.8e-83 313.5 315 56.5
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 2.4e-83 313.2 272 61.0
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 3.1e-83 312.8 325 52.9
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 3.1e-83 312.8 311 52.1
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.1e-83 312.8 313 53.7
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 6.8e-83 311.6 341 52.2
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.2e-82 310.8 313 51.8
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.2e-82 310.8 310 53.5
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.0e-82 310.1 310 53.2
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.4e-82 309.3 317 55.5
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.7e-81 307.0 296 57.1
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.9e-81 306.2 325 52.3
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 6.4e-81 305.1 311 52.4
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 6.4e-81 305.1 318 54.1
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 6.4e-81 305.1 317 52.4
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 4.1e-80 302.4 281 57.3
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 4.1e-80 302.4 297 54.9
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 6.0e-79 298.5 300 53.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 6.0e-79 298.5 297 53.5
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.0e-78 297.7 295 56.3
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.7e-78 297.0 314 50.6
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.7e-78 297.0 317 51.4
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.3e-78 296.6 282 56.7
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 5.1e-78 295.4 315 52.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 8.7e-78 294.7 321 51.1
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.5e-77 293.9 314 54.1
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 5.6e-77 292.0 297 53.2
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 7.3e-77 291.6 295 55.6
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 9.6e-77 291.2 312 49.7
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-76 290.8 320 50.0
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.2e-76 290.8 320 50.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.1e-76 290.0 320 49.4
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 2.1e-76 290.0 320 50.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 2.1e-76 290.0 320 50.0
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 2.1e-76 290.0 320 50.0
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.1e-76 290.0 323 48.9
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.8e-76 289.7 318 52.5
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.8e-76 289.7 308 50.6
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.8e-76 289.7 309 50.2
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 8.1e-76 288.1 311 52.1
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 2.4e-75 286.6 315 49.8
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 4.0e-75 285.8 313 49.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 5.2e-75 285.4 286 53.8
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 6.9e-75 285.0 259 56.8
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 9.0e-75 284.6 316 49.7
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 9.0e-75 284.6 313 46.6
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.2e-74 284.3 316 47.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.2e-74 284.3 325 48.6
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.0e-74 283.5 320 49.7
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 2.0e-74 283.5 320 49.7
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 3.4e-74 282.7 320 49.4
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 3.4e-74 282.7 320 49.4
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.4e-74 282.7 317 48.6
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.8e-74 282.0 316 48.7
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.3e-73 280.8 368 46.5
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.7e-73 280.4 320 49.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.7e-73 280.4 259 56.0
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.8e-73 279.3 320 49.4
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 3.8e-73 279.3 313 48.6
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 4.9e-73 278.9 311 49.2
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 8.4e-73 278.1 320 48.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.1e-72 277.7 323 50.5
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.4e-72 276.6 316 48.1
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.4e-72 276.6 321 48.9
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.4e-72 276.6 321 48.9
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.4e-72 276.6 321 48.9
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.2e-72 275.8 309 48.2
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 7.1e-72 275.0 321 48.9
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 7.1e-72 275.0 319 48.6
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 7.1e-72 275.0 323 50.2
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.2e-71 274.2 319 47.6
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-71 274.2 321 48.9
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.6e-71 273.9 307 49.8
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 7.8e-71 271.6 316 48.1
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 5.1e-70 268.9 304 49.0
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 8.7e-70 268.1 323 49.2
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.5e-69 267.3 284 50.7
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.5e-69 267.3 412 40.5
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 3.3e-69 266.2 321 47.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 4.3e-69 265.8 318 49.4
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 4.8e-68 262.3 320 46.9
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.4e-67 260.8 321 48.0
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.4e-67 260.0 315 45.7
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.5e-66 257.3 259 54.8
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.8e-66 255.4 316 46.2
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 9.9e-66 254.6 318 46.2
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.3e-65 254.2 324 43.5
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.9e-65 253.1 261 51.7
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.9e-65 252.3 298 45.3
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.4e-64 250.8 281 51.6
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.3e-61 239.6 311 43.4
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.8e-59 233.8 319 42.6
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.4e-58 229.6 315 42.9
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.2e-57 226.9 315 42.2
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.9e-57 226.5 316 42.4
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 2.7e-55 219.9 316 43.4
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 7.9e-55 218.4 207 58.0
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.1e-48 198.0 223 48.9
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 3.7e-44 183.0 245 38.4
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 6.3e-44 182.2 219 47.9
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 7.9e-39 165.2 157 53.5
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 8.2e-36 155.2 316 35.1
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 8.2e-36 155.2 165 53.3
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 5.3e-35 152.5 192 43.2
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 2.9e-33 146.7 170 51.8
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.6e-31 141.0 319 30.7
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.9e-30 136.3 320 30.3
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 5.5e-24 115.9 300 32.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.0e-23 112.1 128 46.9
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.3e-22 110.5 128 46.1
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.8e-20 102.8 117 51.3
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.9e-18 95.9 90 58.9
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.6e-15 86.7 111 44.1
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.1e-15 85.9 80 51.2
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.1e-15 85.9 80 51.2
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.3e-12 78.2 92 46.7
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.7e-12 77.8 97 44.3
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.8e-12 77.0 94 43.6
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 6.3e-12 75.9 73 49.3
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.8e-11 74.3 81 46.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 2.0e-10 70.9 92 40.2
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.5e-08 64.7 134 35.8
Cre09.g392616 Chlamydomonas reinhardtii HOM05D004300 ORTHO05D005171 1.0e-06 58.5 311 21.2


User provided reference genes

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