Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 2348.5 1211 100.0
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1374.8 1335 57.5
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1368.6 1368 55.9
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1345.9 1418 54.1
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1344.3 1357 56.8
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1301.2 1346 55.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1279.6 1363 53.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1276.5 1359 54.3
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1271.9 1083 63.2
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1271.5 1305 54.9
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1266.5 1367 51.9
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1260.7 1350 52.7
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1259.2 1383 51.4
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1257.3 1383 51.5
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1253.0 1383 51.4
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1252.7 1383 51.3
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1251.9 1350 52.5
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1250.7 1400 51.6
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1242.6 1368 52.9
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1240.7 1384 52.0
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1240.3 1367 51.9
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1234.6 1382 51.4
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1219.1 1376 51.5
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1218.4 1324 52.4
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1216.1 1356 51.9
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1213.7 1348 50.8
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1211.1 1376 51.2
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1208.7 1384 51.3
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1207.6 1409 49.6
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1206.8 1381 50.5
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1204.5 1322 51.9
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1198.0 1327 51.8
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1186.8 1474 48.6
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1185.2 1402 48.6
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1180.6 1367 49.2
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1173.3 1370 50.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1172.1 1382 48.9
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1166.0 1356 50.6
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1164.8 1358 50.3
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1164.4 1341 49.7
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1164.1 1407 47.3
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1161.7 1320 51.1
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1157.9 1366 48.4
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1157.5 1355 50.3
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1156.0 1391 49.5
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1155.2 1366 49.6
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1149.0 1407 48.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1147.1 1331 50.0
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1137.5 1143 55.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1137.1 1347 49.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1133.6 1344 49.7
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1129.8 1346 49.9
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1129.4 1362 49.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1125.5 1387 48.1
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1125.2 1357 48.9
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1124.8 1373 48.9
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1122.8 1288 50.1
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1115.5 1354 48.8
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1114.4 1359 49.2
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1112.8 1370 47.5
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1112.4 1367 48.0
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1104.0 1460 46.4
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1103.6 1343 49.0
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1099.7 1336 48.7
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1098.6 1344 49.0
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1090.9 1363 48.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1090.5 1379 47.4
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1087.0 1352 48.3
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1083.2 1359 48.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1082.0 1347 47.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1081.6 1353 48.1
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1078.2 1361 48.0
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 1.7e-310 1069.7 1359 47.6
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 2.0e-308 1062.8 1332 48.0
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 8.5e-299 1030.8 1127 52.1
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 7.9e-297 1024.2 1404 43.2
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 3.0e-296 1022.3 1568 42.6
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 2.6e-287 992.6 1570 41.8
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 2.5e-266 922.9 1209 45.2
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.4e-255 885.9 1035 49.5
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 4.4e-255 885.6 1363 40.4
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 2.3e-227 793.5 1166 42.0
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 5.6e-226 788.9 1019 47.1
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 4.0e-224 782.7 996 46.9
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.4e-223 779.6 833 52.8
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 4.6e-212 742.7 733 55.4
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.5e-210 737.6 732 54.8
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 9.3e-205 718.4 1008 44.3
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.4e-184 650.6 769 49.7
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 2.5e-173 614.0 521 61.6
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 2.4e-168 597.4 1298 34.3
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 8.5e-166 589.0 815 44.9
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.6e-146 524.2 447 61.5
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 8.3e-145 519.2 1413 30.1
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.1e-144 518.8 448 61.4
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 8.1e-124 449.5 403 60.0
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 3.2e-120 437.6 352 63.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 4.6e-119 433.7 1437 27.0
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.2e-115 420.2 664 36.7
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 3.6e-108 397.5 617 43.4
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.4e-98 364.4 1000 30.1
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 9.9e-98 362.8 539 43.4
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 2.1e-95 355.1 533 43.3
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.5e-90 339.0 276 63.4
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.0e-86 326.2 734 36.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-83 316.2 500 42.0
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.1e-83 314.3 470 36.8
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.9e-72 278.9 356 48.0
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.5e-65 253.8 353 44.5
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.3e-62 245.4 442 36.7
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 9.1e-59 233.4 138 81.9
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.0e-55 220.3 148 71.6
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-53 216.1 147 74.1
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-52 212.6 434 35.5
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 4.2e-48 198.0 165 64.2
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 7.2e-48 197.2 179 59.2
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 4.0e-46 191.4 224 49.1
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 7.5e-45 187.2 203 52.2
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 2.8e-44 185.3 141 67.4
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.4e-38 166.4 175 53.1
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 5.4e-35 154.5 211 41.2
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 9.5e-32 143.7 137 54.0
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.8e-30 139.4 559 26.3
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 2.3e-30 139.0 167 47.9
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.7e-25 122.9 140 52.1
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 3.9e-25 121.7 96 63.5
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 8.6e-25 120.6 261 33.0
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.6e-23 116.3 213 38.0
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.2e-23 114.4 77 67.5
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 2.3e-22 112.5 1144 21.9
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 8.9e-22 110.5 92 62.0
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.0e-21 109.4 158 42.4
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 4.1e-19 101.7 372 30.4
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.7e-18 99.0 113 46.9
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.7e-17 96.3 210 36.7
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.1e-16 93.6 520 24.8
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 1.5e-16 93.2 571 22.9
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.9e-16 92.8 123 50.4
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 5.6e-16 91.3 62 64.5
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 9.5e-16 90.5 73 63.0
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.6e-15 89.7 142 40.1
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.1e-14 87.0 89 57.3
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 3.4e-13 82.0 154 39.6
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-12 80.1 105 44.8
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 8.3e-12 77.4 91 41.8
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 2.4e-11 75.9 57 71.9
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.2e-10 73.6 53 66.0
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.2e-10 73.6 96 42.7
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 1.6e-10 73.2 65 56.9
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 3.5e-10 72.0 76 46.1
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 3.9e-09 68.6 63 55.6
Sc07g0006880 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.5e-08 66.6 94 43.6
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 4.3e-08 65.1 361 22.7
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 4.3e-08 65.1 73 49.3
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.6e-07 63.2 137 36.5
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.8e-07 62.4 75 50.7
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 6.2e-07 61.2 103 39.8
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 6.2e-07 61.2 100 39.0
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.4e-06 59.3 137 35.8
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 5.2e-06 58.2 45 66.7
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 8.9e-06 57.4 109 39.4


User provided reference genes

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