Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019915 Daucus carota HOM05D003417 ORTHO05D003925 1.1e-113 413.3 204 100.0
Duzib248G0310 Durio zibethinus HOM05D003417 ORTHO05D003925 3.8e-18 95.9 125 44.0
Ciclev10006808m.g Citrus clementina HOM05D003417 ORTHO05D003925 2.7e-16 89.7 125 42.4
Thecc.02G189400 Theobroma cacao HOM05D003417 ORTHO05D003925 8.0e-16 88.2 125 41.6
Actinidia22106 Actinidia chinensis HOM05D003417 ORTHO05D003925 1.0e-15 87.8 127 41.7
Hma1.2p1_0738F.1_g210870 Hydrangea macrophylla HOM05D003417 ORTHO05D003925 1.8e-15 87.0 127 42.5
Manes.09G173000 Manihot esculenta HOM05D003417 ORTHO05D003925 2.3e-15 86.7 109 41.3
Eucgr.G01269 Eucalyptus grandis HOM05D003417 ORTHO05D003925 2.0e-14 83.6 125 36.0
Rhsim12G0015800 Rhododendron simsii HOM05D003417 ORTHO05D003925 2.0e-14 83.6 123 39.8
Dinv04789 Davidia involucrata HOM05D003417 ORTHO05D003925 2.6e-14 83.2 127 40.2
CANSAT56G4330 Cannabis sativa HOM05D003417 ORTHO05D003925 1.7e-13 80.5 123 36.6
Atru.chr12.1453 Acer truncatum HOM05D003417 ORTHO05D003925 2.8e-13 79.7 127 38.6
Nitab4.5_0010036g0010 Nicotiana tabacum HOM05D003417 ORTHO05D003925 2.8e-13 79.7 207 27.5
CSS0017660 Camellia sinensis var. sinensis HOM05D003417 ORTHO05D003925 6.3e-13 78.6 126 38.9
TWI36G0671 Tripterygium wilfordii HOM05D003417 ORTHO05D003925 6.3e-13 78.6 110 43.6
GSVIVG01001116001 Vitis vinifera HOM05D003417 ORTHO05D003925 1.4e-12 77.4 127 37.8
RcHm_v2.0_Chr4g0428531 Rosa chinensis HOM05D003417 ORTHO05D003925 3.1e-12 76.3 117 38.5
ClCG06G001670 Citrullus lanatus HOM05D003417 ORTHO05D003925 4.1e-12 75.9 69 50.7
ClCG06G001680 Citrullus lanatus HOM05D003417 ORTHO05D003925 4.1e-12 75.9 69 50.7
Ca_24409_v3 Cicer arietinum L. HOM05D003417 ORTHO05D003925 5.3e-12 75.5 110 40.0
Nn4g22090 Nelumbo nucifera HOM05D003417 ORTHO05D003925 7.0e-12 75.1 112 39.3
QL04p039539 Quercus lobata HOM05D003417 ORTHO05D003925 7.0e-12 75.1 121 39.7
QL93p0170_0146 Quercus lobata HOM05D003417 ORTHO05D003925 7.0e-12 75.1 105 42.9
Medtr5g006540 Medicago truncatula HOM05D003417 ORTHO05D003925 9.1e-12 74.7 110 39.1
SalBow6G6928 Salvia bowleyana HOM05D003417 ORTHO05D003925 9.1e-12 74.7 66 54.5
MSTRG.440 Avicennia marina HOM05D003417 ORTHO05D003925 1.2e-11 74.3 108 41.7
Migut.K01128 Erythranthe guttata HOM05D003417 ORTHO05D003925 1.6e-11 73.9 65 53.8
Lsat_1_v5_gn_4_36021 Lactuca sativa HOM05D003417 ORTHO05D003925 1.6e-11 73.9 127 34.6
Potri.003G160700 Populus trichocarpa HOM05D003417 ORTHO05D003925 1.6e-11 73.9 122 38.5
TAR371G0461 Trochodendron aralioides HOM05D003417 ORTHO05D003925 2.0e-11 73.6 124 38.7
Gohir.D02G176350 Gossypium hirsutum HOM05D003417 ORTHO05D003925 2.7e-11 73.2 124 36.3
CiPaw.05G099200 Carya illinoinensis HOM05D003417 ORTHO05D003925 3.5e-11 72.8 127 37.8
Thhalv10023743m.g Eutrema salsugineum HOM05D003417 ORTHO05D003925 3.5e-11 72.8 94 38.3
Lj6P839T31 Lonicera japonica HOM05D003417 ORTHO05D003925 3.5e-11 72.8 63 52.4
LjContig00408g0013061 Lotus japonicus HOM05D003417 ORTHO05D003925 3.5e-11 72.8 106 40.6
PSO017G5382 Papaver somniferum HOM05D003417 ORTHO05D003925 3.5e-11 72.8 131 34.4
CAN.G1008.44 Capsicum annuum HOM05D003417 ORTHO05D003925 4.5e-11 72.4 200 28.0
MELO3C022364.2 Cucumis melo HOM05D003417 ORTHO05D003925 4.5e-11 72.4 128 35.2
Sed0017226 Sechium edule HOM05D003417 ORTHO05D003925 4.5e-11 72.4 127 33.1
Prupe.1G212400 Prunus persica HOM05D003417 ORTHO05D003925 5.9e-11 72.0 122 34.4
HanXRQChr17g0557071 Helianthus annuus HOM05D003417 ORTHO05D003925 7.7e-11 71.6 121 36.4
PSO478G0254 Papaver somniferum HOM05D003417 ORTHO05D003925 7.7e-11 71.6 131 33.6
Psat2g190600 Pisum sativum HOM05D003417 ORTHO05D003925 7.7e-11 71.6 111 38.7
PGR142G4203 Punica granatum HOM05D003417 ORTHO05D003925 7.7e-11 71.6 122 40.2
TPR.G37882 Trifolium pratense HOM05D003417 ORTHO05D003925 7.7e-11 71.6 66 50.0
Sabra03G0116900 Salix brachista HOM05D003417 ORTHO05D003925 1.0e-10 71.2 126 35.7
Haze_12521 Corylus avellana HOM05D003417 ORTHO05D003925 1.3e-10 70.9 103 39.8
Glyma.01G236200 Glycine max HOM05D003417 ORTHO05D003925 1.3e-10 70.9 86 41.9
Gorai.005G198000 Gossypium raimondii HOM05D003417 ORTHO05D003925 1.3e-10 70.9 66 51.5
SalBow6G0662 Salvia bowleyana HOM05D003417 ORTHO05D003925 1.3e-10 70.9 114 36.0
SHI04108 Sapria himalayana HOM05D000154 ORTHO05D000092 1.3e-10 70.9 104 36.5
CsaV3_6G007690 Cucumis sativus L. HOM05D003417 ORTHO05D003925 1.7e-10 70.5 69 46.4
Sc11g0000040 Simmondsia chinensis HOM05D003417 ORTHO05D003925 1.7e-10 70.5 69 47.8
Aqoxy5G01345 Aquilegia oxysepala HOM05D003417 ORTHO05D003925 2.2e-10 70.1 128 33.6
Lalb_Chr05g0211061 Lupinus albus HOM05D003417 ORTHO05D003925 2.2e-10 70.1 124 34.7
Sp2g01510 Schrenkiella parvula HOM05D003417 ORTHO05D003925 2.2e-10 70.1 94 38.3
arahy.Tifrunner.gnm1.ann1.0A1KUW Arachis hypogaea HOM05D003417 ORTHO05D003925 2.9e-10 69.7 115 37.4
COL.COLO4_08097 Corchorus olitorius HOM05D003417 ORTHO05D003925 2.9e-10 69.7 59 54.2
MD16G1143400 Malus domestica HOM05D003417 ORTHO05D003925 2.9e-10 69.7 125 38.4
VMungo1215G0885 Vigna mungo HOM05D003417 ORTHO05D003925 2.9e-10 69.7 109 37.6
AUR62044738 Chenopodium quinoa HOM05D003417 ORTHO05D003925 3.8e-10 69.3 105 36.2
DCAR_025634 Daucus carota HOM05D003417 ORTHO05D003925 3.8e-10 69.3 101 36.6
FAN12G1056 Fragaria x ananassa HOM05D003417 ORTHO05D003925 3.8e-10 69.3 129 34.9
FAN17G1846 Fragaria x ananassa HOM05D003417 ORTHO05D003925 3.8e-10 69.3 127 35.4
CSS0030975 Camellia sinensis var. sinensis HOM05D003417 ORTHO05D003925 5.0e-10 68.9 124 36.3
CANSAT56G3475 Cannabis sativa HOM05D003417 ORTHO05D003925 5.0e-10 68.9 125 34.4
FvH4_4g22290 Fragaria vesca HOM05D003417 ORTHO05D003925 5.0e-10 68.9 104 37.5
FAN04G2197 Fragaria x ananassa HOM05D000001 ORTHO05D010118 5.0e-10 68.9 107 37.4
arahy.Tifrunner.gnm1.ann1.EYAH79 Arachis hypogaea HOM05D003417 ORTHO05D003925 6.5e-10 68.6 115 37.4
FAN07G2334 Fragaria x ananassa HOM05D003417 ORTHO05D003925 6.5e-10 68.6 127 35.4
BcaC04g22723 Brassica carinata HOM05D003417 ORTHO05D003925 8.5e-10 68.2 94 37.2
BcaC04g22724 Brassica carinata HOM05D003417 ORTHO05D003925 8.5e-10 68.2 94 37.2
A09p13420 Brassica napus HOM05D003417 ORTHO05D003925 8.5e-10 68.2 94 37.2
C09p15920 Brassica napus HOM05D003417 ORTHO05D003925 8.5e-10 68.2 94 37.2
Cc09_g02790 Coffea canephora HOM05D003417 ORTHO05D003925 8.5e-10 68.2 114 35.1
Aa31LG2G550 Aethionema arabicum HOM05D003417 ORTHO05D003925 1.1e-09 67.8 96 39.6
AUR62019228 Chenopodium quinoa HOM05D003417 ORTHO05D003925 1.1e-09 67.8 69 43.5
FAN08G0820 Fragaria x ananassa HOM05D003417 ORTHO05D003925 1.1e-09 67.8 107 37.4
Lalb_Chr07g0183911 Lupinus albus HOM05D003417 ORTHO05D003925 1.1e-09 67.8 107 36.4
THA.LOC104823574 Tarenaya hassleriana HOM05D003417 ORTHO05D003925 1.1e-09 67.8 95 40.0
AUR62036972 Chenopodium quinoa HOM05D003417 ORTHO05D003925 1.5e-09 67.4 100 37.0
GSVIVG01008665001 Vitis vinifera HOM05D003417 ORTHO05D003925 1.5e-09 67.4 102 38.2
Manes.06G128100 Manihot esculenta HOM05D003417 ORTHO05D003925 1.9e-09 67.0 124 31.5
CDE06G0345 Ceratophyllum demersum HOM05D003417 ORTHO05D003925 2.5e-09 66.6 125 32.0
Potri.012G111000 Populus trichocarpa HOM05D003417 ORTHO05D003925 2.5e-09 66.6 105 34.3
AL2G12520 Arabidopsis lyrata HOM05D003417 ORTHO05D003925 3.2e-09 66.2 99 35.4
AT1G63060 Arabidopsis thaliana HOM05D003417 ORTHO05D003925 3.2e-09 66.2 95 33.7
BcaC06g31933 Brassica carinata HOM05D003417 ORTHO05D003925 3.2e-09 66.2 115 35.7
BraA09t36989Z Brassica rapa HOM05D003417 ORTHO05D003925 3.2e-09 66.2 127 33.1
Carub.0002s0193 Capsella rubella HOM05D003417 ORTHO05D003925 3.2e-09 66.2 95 33.7
CARHR048550 Cardamine hirsuta HOM05D003417 ORTHO05D003925 3.2e-09 66.2 107 33.6
AUR62000056 Chenopodium quinoa HOM05D003417 ORTHO05D003925 3.2e-09 66.2 69 43.5
MD14G1144900 Malus domestica HOM05D003417 ORTHO05D003925 3.2e-09 66.2 109 33.0
CDE06G2784 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 4.2e-09 65.9 125 32.0
COL.COLO4_37277 Corchorus olitorius HOM05D003417 ORTHO05D003925 4.2e-09 65.9 105 34.3
TPR.G12773 Trifolium pratense HOM05D003417 ORTHO05D003925 4.2e-09 65.9 108 34.3
FAN13G2779 Fragaria x ananassa HOM05D003417 ORTHO05D003925 5.5e-09 65.5 86 38.4
Gohir.D03G111100 Gossypium hirsutum HOM05D003417 ORTHO05D003925 5.5e-09 65.5 106 34.0
Peaxi162Scf00423g00126 Petunia axillaris HOM05D003417 ORTHO05D003925 5.5e-09 65.5 126 31.7
Phvul.002G280400 Phaseolus vulgaris HOM05D003417 ORTHO05D003925 5.5e-09 65.5 101 34.7
Sopen03g036950 Solanum pennellii HOM05D003417 ORTHO05D003925 5.5e-09 65.5 122 32.8
RcHm_v2.0_Chr7g0188371 Rosa chinensis HOM05D003417 ORTHO05D003925 7.2e-09 65.1 107 36.4
Sopen05g032080 Solanum pennellii HOM05D003417 ORTHO05D003925 7.2e-09 65.1 110 40.0
EL10Ac5g11264 Beta vulgaris HOM05D003417 ORTHO05D003925 9.4e-09 64.7 122 27.9
Solyc05g053555.1 Solanum lycopersicum HOM05D003417 ORTHO05D003925 9.4e-09 64.7 110 40.0
TAR622G1221 Trochodendron aralioides HOM05D003417 ORTHO05D003925 9.4e-09 64.7 122 33.6
arahy.Tifrunner.gnm1.ann1.4S2L0G Arachis hypogaea HOM05D003417 ORTHO05D003925 1.2e-08 64.3 104 33.7
MD00G1076100 Malus domestica HOM05D003417 ORTHO05D003925 1.2e-08 64.3 123 32.5
FvH4_5g09901 Fragaria vesca HOM05D003417 ORTHO05D003925 1.6e-08 63.9 66 43.9
Medtr8g096020 Medicago truncatula HOM05D003417 ORTHO05D003925 1.6e-08 63.9 110 33.6
Psat7g040000 Pisum sativum HOM05D003417 ORTHO05D003925 1.6e-08 63.9 110 34.5
Potri.015G109100 Populus trichocarpa HOM05D003417 ORTHO05D003925 1.6e-08 63.9 125 28.8
PGSC0003DMG400019112 Solanum tuberosum HOM05D003417 ORTHO05D003925 1.6e-08 63.9 121 36.4
VMungo0251G0234 Vigna mungo HOM05D000001 ORTHO05D010118 1.6e-08 63.9 103 34.0
arahy.Tifrunner.gnm1.ann1.J517PC Arachis hypogaea HOM05D003417 ORTHO05D003925 2.1e-08 63.5 105 34.3
Ciclev10032920m.g Citrus clementina HOM05D003417 ORTHO05D003925 2.1e-08 63.5 109 33.9
Glyma.05G199300 Glycine max HOM05D003417 ORTHO05D003925 2.1e-08 63.5 117 31.6
Ca_16817_v3 Cicer arietinum L. HOM05D003417 ORTHO05D003925 2.7e-08 63.2 108 31.5
Oeu051179.2 Olea europaea HOM05D003417 ORTHO05D003925 2.7e-08 63.2 84 39.3
Sc12g0010620 Simmondsia chinensis HOM05D003417 ORTHO05D003925 2.7e-08 63.2 103 35.9
Thecc.03G142400 Theobroma cacao HOM05D003417 ORTHO05D003925 2.7e-08 63.2 103 35.9
Cc04_g05680 Coffea canephora HOM05D003417 ORTHO05D003925 3.6e-08 62.8 106 34.0
ECA234G4133 Erigeron canadensis HOM05D003417 ORTHO05D003925 4.7e-08 62.4 106 33.0
PSO017G5943 Papaver somniferum HOM05D003417 ORTHO05D003925 4.7e-08 62.4 117 35.0
Sp6g35550 Schrenkiella parvula HOM05D003417 ORTHO05D003925 4.7e-08 62.4 112 30.4
Solyc03g118050.3 Solanum lycopersicum HOM05D003417 ORTHO05D003925 4.7e-08 62.4 122 32.0
Carub.0006s0630 Capsella rubella HOM05D003417 ORTHO05D003925 6.1e-08 62.0 109 29.4
ECA232G4830 Erigeron canadensis HOM05D003417 ORTHO05D003925 6.1e-08 62.0 111 28.8
AL6G17600 Arabidopsis lyrata HOM05D003417 ORTHO05D003925 8.0e-08 61.6 109 29.4
BcaC06g32447 Brassica carinata HOM05D003417 ORTHO05D003925 8.0e-08 61.6 113 28.3
CsaV3_3G017500 Cucumis sativus L. HOM05D003417 ORTHO05D003925 8.0e-08 61.6 103 35.9
PSO478G4422 Papaver somniferum HOM05D003417 ORTHO05D003925 8.0e-08 61.6 117 34.2
unitig_26.g10436 Utricularia gibba HOM05D003417 ORTHO05D003925 8.0e-08 61.6 115 36.5
Aa31LG3G19040 Aethionema arabicum HOM05D003417 ORTHO05D003925 1.0e-07 61.2 99 30.3
AUR62032202 Chenopodium quinoa HOM05D003417 ORTHO05D003925 1.0e-07 61.2 69 36.2
Thhalv10015935m.g Eutrema salsugineum HOM05D003417 ORTHO05D003925 1.0e-07 61.2 119 29.4
Nn8g40516 Nelumbo nucifera HOM05D003417 ORTHO05D003925 1.0e-07 61.2 121 28.9
PGSC0003DMG400014233 Solanum tuberosum HOM05D003417 ORTHO05D003925 1.0e-07 61.2 121 31.4
Ah.02g114510 Amaranthus hybridus HOM05D003417 ORTHO05D003925 1.4e-07 60.8 144 31.9
Dinv13701 Davidia involucrata HOM05D003417 ORTHO05D003925 2.3e-07 60.1 101 33.7
Lj4g0015426 Lotus japonicus HOM05D003417 ORTHO05D003925 2.3e-07 60.1 129 31.8
Sc12g0010610 Simmondsia chinensis HOM05D003417 ORTHO05D003925 2.3e-07 60.1 79 38.0
CAN.G305.6 Capsicum annuum HOM05D003417 ORTHO05D003925 3.0e-07 59.7 105 39.0
CARHR205820 Cardamine hirsuta HOM05D003417 ORTHO05D003925 3.0e-07 59.7 101 26.7
Eucgr.G02781 Eucalyptus grandis HOM05D003417 ORTHO05D003925 4.0e-07 59.3 105 30.5
Os11g0533400 Oryza sativa ssp. japonica HOM05D003417 ORTHO05D003925 4.0e-07 59.3 67 38.8
HPP92_009802 Vanilla planifolia HOM05D003417 ORTHO05D003925 4.0e-07 59.3 68 39.7
Prupe.5G139500 Prunus persica HOM05D003417 ORTHO05D003925 5.2e-07 58.9 108 30.6
SHI04103 Sapria himalayana HOM05D003417 ORTHO05D003925 5.2e-07 58.9 109 33.0
C09p69490 Brassica napus HOM05D003417 ORTHO05D003925 6.8e-07 58.5 108 29.6
BolC9t59693H Brassica oleracea HOM05D003417 ORTHO05D003925 6.8e-07 58.5 108 29.6
MELO3C006933.2 Cucumis melo HOM05D003417 ORTHO05D003925 8.8e-07 58.2 103 35.0
Nitab4.5_0000976g0210 Nicotiana tabacum HOM05D003417 ORTHO05D003925 8.8e-07 58.2 91 31.9
PGR142G3056 Punica granatum HOM05D003417 ORTHO05D003925 8.8e-07 58.2 101 31.7
A10p29100 Brassica napus HOM05D003417 ORTHO05D003925 1.2e-06 57.8 65 35.4
BraA10t44959Z Brassica rapa HOM05D003417 ORTHO05D003925 1.2e-06 57.8 65 35.4
AUR62036971 Chenopodium quinoa HOM05D003417 ORTHO05D003925 1.5e-06 57.4 106 29.2
SGA_v2.0_scaffold37G14660 Striga asiatica HOM05D000001 ORTHO05D010118 1.5e-06 57.4 127 29.1
SGA_v2.0_scaffold74G24631 Striga asiatica HOM05D000177 ORTHO05D002987 1.5e-06 57.4 68 39.7
MBI07_g07554_MAGBIO Magnolia biondii HOM05D003417 ORTHO05D003925 2.0e-06 57.0 76 36.8
Solyc03g118060.3 Solanum lycopersicum HOM05D003417 ORTHO05D003925 2.0e-06 57.0 110 31.8
TWI23G0415 Tripterygium wilfordii HOM05D003417 ORTHO05D003925 2.0e-06 57.0 96 26.0
HanXRQChr16g0499291 Helianthus annuus HOM05D003417 ORTHO05D003925 3.4e-06 56.2 124 29.0
Sed0011159 Sechium edule HOM05D003417 ORTHO05D003925 3.4e-06 56.2 106 31.1
Haze_07083 Corylus avellana HOM05D003417 ORTHO05D003925 4.4e-06 55.8 102 31.4
Migut.I00656 Erythranthe guttata HOM05D003417 ORTHO05D003925 5.7e-06 55.5 131 33.6
Peaxi162Scf00314g00746 Petunia axillaris HOM05D003417 ORTHO05D003925 5.7e-06 55.5 194 24.7
THA.LOC104801745 Tarenaya hassleriana HOM05D003417 ORTHO05D003925 5.7e-06 55.5 104 28.8
AT5G07330 Arabidopsis thaliana HOM05D003417 ORTHO05D003925 7.5e-06 55.1 122 24.6
Cpa.g.sc13.191 Carica papaya HOM05D003417 ORTHO05D003925 7.5e-06 55.1 64 32.8
SalBow1G3329 Salvia bowleyana HOM05D003417 ORTHO05D003925 7.5e-06 55.1 105 28.6
Eucgr.J01143 Eucalyptus grandis HOM05D003417 ORTHO05D003925 9.8e-06 54.7 101 29.7
vmacro16765 Vaccinium macrocarpon HOM05D003417 ORTHO05D003925 9.8e-06 54.7 102 32.4
vmacro16773 Vaccinium macrocarpon HOM05D003417 ORTHO05D003925 9.8e-06 54.7 102 32.4


User provided reference genes

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