Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019864 Daucus carota HOM05D003272 ORTHO05D003776 0.0e+00 1808.9 925 100.0
DCAR_019865 Daucus carota HOM05D003272 ORTHO05D003776 0.0e+00 1221.5 1013 67.6
DCAR_019863 Daucus carota HOM05D003272 ORTHO05D003776 5.6e-218 761.9 1020 47.8
CSS0044868 Camellia sinensis var. sinensis HOM05D003272 ORTHO05D003776 4.0e-155 553.1 966 41.9
Dinv16344 Davidia involucrata HOM05D003272 ORTHO05D003776 4.0e-155 553.1 979 41.6
DCAR_017040 Daucus carota HOM05D003272 ORTHO05D003776 1.8e-152 544.3 994 40.7
GSVIVG01033469001 Vitis vinifera HOM05D003272 ORTHO05D003776 3.1e-152 543.5 933 42.0
Atru.chr8.1154 Acer truncatum HOM05D003272 ORTHO05D003776 3.6e-148 530.0 989 40.8
Rhsim04G0095400 Rhododendron simsii HOM05D003272 ORTHO05D003776 8.0e-148 528.9 969 41.2
Dinv24041 Davidia involucrata HOM05D003272 ORTHO05D003776 1.0e-147 528.5 685 47.3
Thecc.05G174800 Theobroma cacao HOM05D003272 ORTHO05D003776 1.2e-146 525.0 1044 39.0
Ciclev10010926m.g Citrus clementina HOM05D003272 ORTHO05D003776 1.7e-145 521.2 996 39.9
DCAR_013670 Daucus carota HOM05D003272 ORTHO05D003776 1.7e-145 521.2 679 48.0
Actinidia17288 Actinidia chinensis HOM05D003272 ORTHO05D003776 3.7e-145 520.0 951 40.6
TWI74G0429 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 6.6e-142 509.2 713 46.4
Cc06_g15520 Coffea canephora HOM05D003272 ORTHO05D003776 1.9e-141 507.7 658 48.9
Cfa020144 Carpinus fangiana HOM05D003272 ORTHO05D003776 2.5e-141 507.3 1035 38.6
COL.COLO4_29357 Corchorus olitorius HOM05D003272 ORTHO05D003776 3.3e-141 506.9 1042 36.9
Potri.006G194500 Populus trichocarpa HOM05D003272 ORTHO05D003776 3.3e-141 506.9 960 37.0
Potri.016G060200 Populus trichocarpa HOM05D003272 ORTHO05D003776 5.6e-141 506.1 680 47.1
TWI77G0466 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 7.3e-141 505.8 1050 37.6
Lj1C1133T6 Lonicera japonica HOM05D003272 ORTHO05D003776 9.5e-141 505.4 674 47.5
Solyc10g079010.3 Solanum lycopersicum HOM05D003272 ORTHO05D003776 9.5e-141 505.4 685 46.1
Actinidia38598 Actinidia chinensis HOM05D003272 ORTHO05D003776 1.2e-140 505.0 911 41.5
Sopen10g029630 Solanum pennellii HOM05D003272 ORTHO05D003776 1.2e-140 505.0 783 43.0
CiPaw.10G025200 Carya illinoinensis HOM05D003272 ORTHO05D003776 1.6e-140 504.6 971 39.3
CAN.G960.20 Capsicum annuum HOM05D003272 ORTHO05D003776 4.7e-140 503.1 685 46.9
QL07p024475 Quercus lobata HOM05D003272 ORTHO05D003776 4.7e-140 503.1 992 39.3
Actinidia22066 Actinidia chinensis HOM05D003272 ORTHO05D003776 5.2e-139 499.6 918 39.9
Gorai.013G213300 Gossypium raimondii HOM05D003272 ORTHO05D003776 5.2e-139 499.6 1034 38.0
Gohir.A04G054400 Gossypium hirsutum HOM05D003272 ORTHO05D003776 6.8e-139 499.2 1038 37.6
Manes.09G037500 Manihot esculenta HOM05D003272 ORTHO05D003776 6.8e-139 499.2 990 38.7
Nitab4.5_0000358g0060 Nicotiana tabacum HOM05D003272 ORTHO05D003776 1.5e-138 498.0 703 46.2
MD14G1054100 Malus domestica HOM05D003272 ORTHO05D003776 1.7e-137 494.6 926 39.2
Sabra06G0149200 Salix brachista HOM05D003272 ORTHO05D003776 3.7e-137 493.4 1031 38.0
Cpa.g.sc85.47 Carica papaya HOM05D003272 ORTHO05D003776 6.4e-137 492.7 1076 37.6
Migut.J01867 Erythranthe guttata HOM05D003272 ORTHO05D003776 1.4e-136 491.5 679 46.1
Duzib093G2065 Durio zibethinus HOM05D003272 ORTHO05D003776 2.4e-136 490.7 1034 38.2
TPR.G30306 Trifolium pratense HOM05D003272 ORTHO05D003776 4.1e-136 490.0 968 38.0
Gorai.002G155500 Gossypium raimondii HOM05D003272 ORTHO05D003776 5.4e-136 489.6 1008 37.3
TWI53G1277 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 5.4e-136 489.6 986 37.9
RcHm_v2.0_Chr3g0479241 Rosa chinensis HOM05D003272 ORTHO05D003776 7.0e-136 489.2 676 46.2
FAN05G4520 Fragaria x ananassa HOM05D003272 ORTHO05D003776 9.2e-136 488.8 874 41.2
Glyma.03G146500 Glycine max HOM05D003272 ORTHO05D003776 1.6e-135 488.0 987 37.9
MELO3C009057.2 Cucumis melo HOM05D003272 ORTHO05D003776 4.6e-135 486.5 681 45.5
Lalb_Chr04g0259561 Lupinus albus HOM05D003272 ORTHO05D003776 4.6e-135 486.5 888 38.9
SalBow6G0671 Salvia bowleyana HOM05D003272 ORTHO05D003776 1.3e-134 485.0 703 43.8
CANSAT64G1991 Cannabis sativa HOM05D003272 ORTHO05D003776 3.9e-134 483.4 656 47.4
Ca_08539_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 8.6e-134 482.3 682 44.1
Nn7g35964 Nelumbo nucifera HOM05D003272 ORTHO05D003776 1.5e-133 481.5 990 39.4
Peaxi162Scf00463g00423 Petunia axillaris HOM05D003272 ORTHO05D003776 1.5e-133 481.5 733 44.5
FvH4_6g21890 Fragaria vesca HOM05D003272 ORTHO05D003776 1.9e-133 481.1 931 39.5
CsaV3_4G031310 Cucumis sativus L. HOM05D003272 ORTHO05D003776 2.5e-133 480.7 681 45.5
Medtr7g093630 Medicago truncatula HOM05D003272 ORTHO05D003776 3.3e-133 480.3 976 37.9
Hund24815 Selenicereus undatus HOM05D003272 ORTHO05D003776 9.5e-133 478.8 974 37.9
Lalb_Chr15g0079101 Lupinus albus HOM05D003272 ORTHO05D003776 1.6e-132 478.0 950 37.9
ECA238G2479 Erigeron canadensis HOM05D003272 ORTHO05D003776 2.1e-132 477.6 789 42.7
arahy.Tifrunner.gnm1.ann1.LQ935E Arachis hypogaea HOM05D003272 ORTHO05D003776 2.8e-132 477.2 679 43.7
arahy.Tifrunner.gnm1.ann1.VD9RJB Arachis hypogaea HOM05D003272 ORTHO05D003776 2.8e-132 477.2 679 43.6
SGA_v2.0_scaffold69G23041 Striga asiatica HOM05D003272 ORTHO05D003776 2.8e-132 477.2 945 39.2
PGR142G2098 Punica granatum HOM05D003272 ORTHO05D003776 4.7e-132 476.5 949 38.5
TPR.G13362 Trifolium pratense HOM05D003272 ORTHO05D003776 4.7e-132 476.5 980 35.8
Glyma.19G149800 Glycine max HOM05D003272 ORTHO05D003776 6.2e-132 476.1 958 36.6
THA.LOC104802668 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 6.2e-132 476.1 714 44.8
vmacro22121 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 1.1e-131 475.3 1059 37.2
Lsat_1_v5_gn_2_56141 Lactuca sativa HOM05D003272 ORTHO05D003776 2.3e-131 474.2 712 44.2
Psat0s4022g0120 Pisum sativum HOM05D003272 ORTHO05D003776 3.1e-131 473.8 943 38.7
Gohir.A01G137100 Gossypium hirsutum HOM05D003272 ORTHO05D003776 5.2e-131 473.0 710 44.6
Sabra16G0063100 Salix brachista HOM05D003272 ORTHO05D003776 5.2e-131 473.0 931 36.5
Medtr1g054355 Medicago truncatula HOM05D003272 ORTHO05D003776 6.8e-131 472.6 972 37.2
Gohir.D01G124900 Gossypium hirsutum HOM05D003272 ORTHO05D003776 8.9e-131 472.2 710 44.5
Sed0015981 Sechium edule HOM05D003272 ORTHO05D003776 1.2e-130 471.9 786 41.3
MSTRG.19926 Avicennia marina HOM05D003272 ORTHO05D003776 4.4e-130 469.9 929 39.6
Lj1g0008912 Lotus japonicus HOM05D003272 ORTHO05D003776 4.4e-130 469.9 679 43.9
Lalb_Chr18g0048041 Lupinus albus HOM05D003272 ORTHO05D003776 7.5e-130 469.2 710 42.4
HanXRQChr14g0438261 Helianthus annuus HOM05D003272 ORTHO05D003776 1.7e-129 468.0 838 40.1
Nitab4.5_0000009g0220 Nicotiana tabacum HOM05D003272 ORTHO05D003776 1.7e-129 468.0 889 40.4
Phvul.001G144300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 2.2e-129 467.6 1065 34.9
TAR623G1173 Trochodendron aralioides HOM05D003272 ORTHO05D003776 2.2e-129 467.6 602 45.7
Sed0015373 Sechium edule HOM05D003272 ORTHO05D003776 3.7e-129 466.8 683 44.5
Nn2g15739 Nelumbo nucifera HOM05D003272 ORTHO05D003776 1.1e-128 465.3 491 51.5
Psat3g067560 Pisum sativum HOM05D003272 ORTHO05D003776 1.4e-128 464.9 975 37.2
THA.LOC104824482 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 1.4e-128 464.9 929 39.1
Glyma.09G109000 Glycine max HOM05D003272 ORTHO05D003776 1.9e-128 464.5 928 38.0
Sc13g0002400 Simmondsia chinensis HOM05D003272 ORTHO05D003776 4.1e-128 463.4 679 44.6
Rhsim03G0003200 Rhododendron simsii HOM05D003272 ORTHO05D003776 5.4e-128 463.0 945 38.6
EL10Ac3g06883 Beta vulgaris HOM05D003272 ORTHO05D003776 7.0e-128 462.6 955 37.6
Eucgr.K01852 Eucalyptus grandis HOM05D003272 ORTHO05D003776 9.2e-128 462.2 667 42.7
FAN14G3195 Fragaria x ananassa HOM05D003272 ORTHO05D003776 9.2e-128 462.2 931 39.2
MSTRG.6497 Avicennia marina HOM05D003272 ORTHO05D003776 4.6e-127 459.9 945 37.1
FAN09G3998 Fragaria x ananassa HOM05D003272 ORTHO05D003776 7.8e-127 459.1 701 44.2
HanXRQChr14g0443181 Helianthus annuus HOM05D003272 ORTHO05D003776 1.0e-126 458.8 930 38.4
Aa31LG10G12750 Aethionema arabicum HOM05D003272 ORTHO05D003776 1.7e-126 458.0 915 38.4
AUR62015331 Chenopodium quinoa HOM05D003272 ORTHO05D003776 1.7e-126 458.0 925 35.7
Lsat_1_v5_gn_1_60961 Lactuca sativa HOM05D003272 ORTHO05D003776 2.3e-126 457.6 867 39.8
MBI13_g29652_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 3.0e-126 457.2 699 43.5
Aqoxy2G00092 Aquilegia oxysepala HOM05D003272 ORTHO05D003776 3.9e-126 456.8 1006 36.2
ECA248G2064 Erigeron canadensis HOM05D003272 ORTHO05D003776 5.0e-126 456.4 656 44.7
vmacro22626 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 5.0e-126 456.4 684 44.6
VMungo0720G0611 Vigna mungo HOM05D003272 ORTHO05D003776 5.0e-126 456.4 723 41.9
MBI19_g17426_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 1.1e-125 455.3 974 37.7
AL5G39720 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 1.9e-125 454.5 928 37.9
Phvul.007G261300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 3.3e-125 453.8 723 41.6
ATR0598G091 Amborella trichopoda HOM05D003272 ORTHO05D003776 6.2e-124 449.5 491 49.1
Sp5g04670 Schrenkiella parvula HOM05D003272 ORTHO05D003776 8.1e-124 449.1 916 38.5
FAN02G4424 Fragaria x ananassa HOM05D003272 ORTHO05D003776 2.3e-123 447.6 953 38.0
CiPaw.09G028500 Carya illinoinensis HOM05D003272 ORTHO05D003776 3.1e-123 447.2 864 40.4
Duzib106G0166 Durio zibethinus HOM05D003272 ORTHO05D003776 6.8e-123 446.0 710 41.8
AT3G58050 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 5.8e-122 443.0 940 36.5
CARHR168370 Cardamine hirsuta HOM05D003272 ORTHO05D003776 9.9e-122 442.2 655 43.8
Haze_20019 Corylus avellana HOM05D003272 ORTHO05D003776 8.3e-121 439.1 1159 33.9
Prupe.7G081000 Prunus persica HOM05D003272 ORTHO05D003776 8.3e-121 439.1 674 44.2
Ca_12036_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 1.7e-118 431.4 744 39.7
SEGI_10284 Sequoiadendron giganteum HOM05D003272 ORTHO05D003776 2.3e-118 431.0 483 49.3
Mapoly0087s0049 Marchantia polymorpha HOM05D003272 ORTHO05D003776 5.1e-118 429.9 496 48.8
Pp3c6_26480 Physcomitrium patens HOM05D003272 ORTHO05D003776 3.3e-117 427.2 491 48.3
CARHR137060 Cardamine hirsuta HOM05D003272 ORTHO05D003776 5.6e-117 426.4 508 47.2
Nitab4.5_0002339g0030 Nicotiana tabacum HOM05D003272 ORTHO05D003776 1.2e-116 425.2 869 38.0
Pp3c16_15960 Physcomitrium patens HOM05D003272 ORTHO05D003776 1.2e-116 425.2 491 47.9
Zm00001eb399270 Zea mays HOM05D003272 ORTHO05D003776 8.1e-116 422.5 477 47.2
Aa31LG1G24170 Aethionema arabicum HOM05D003272 ORTHO05D003776 1.1e-115 422.2 513 47.6
Lj2C363G5 Lonicera japonica HOM05D003272 ORTHO05D003776 1.8e-115 421.4 919 34.3
SalBow1G7043 Salvia bowleyana HOM05D003272 ORTHO05D003776 4.0e-115 420.2 431 50.8
PSO339G1267 Papaver somniferum HOM05D003272 ORTHO05D003776 5.2e-115 419.9 687 40.9
SMO137G0342 Selaginella moellendorffii HOM05D003272 ORTHO05D003776 8.9e-115 419.1 479 48.2
PSO384G2805 Papaver somniferum HOM05D003272 ORTHO05D003776 1.5e-114 418.3 687 40.9
Peaxi162Scf00003g00473 Petunia axillaris HOM05D003272 ORTHO05D003776 5.8e-114 416.4 708 42.5
Zm00001eb025760 Zea mays HOM05D003272 ORTHO05D003776 9.9e-114 415.6 467 48.0
AUR62012007 Chenopodium quinoa HOM05D003272 ORTHO05D003776 1.7e-113 414.8 937 34.0
unitig_0.g524 Utricularia gibba HOM05D003272 ORTHO05D003776 2.2e-113 414.5 463 47.5
Carub.0004s2429 Capsella rubella HOM05D003272 ORTHO05D003776 2.9e-113 414.1 929 37.5
AL4G40320 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 8.4e-113 412.5 914 36.8
A05p02660 Brassica napus HOM05D003272 ORTHO05D003776 1.4e-112 411.8 454 49.6
AT2G41960 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 1.2e-111 408.7 909 36.5
Sp4g24230 Schrenkiella parvula HOM05D003272 ORTHO05D003776 6.0e-111 406.4 974 36.1
Gohir.D04G097200 Gossypium hirsutum HOM05D003272 ORTHO05D003776 1.3e-110 405.2 891 37.1
ClCG04G000900 Citrullus lanatus HOM05D003272 ORTHO05D003776 1.1e-109 402.1 476 46.2
Ah.04g152770 Amaranthus hybridus HOM05D003272 ORTHO05D003776 1.5e-109 401.7 426 48.6
Thhalv10016156m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 4.3e-109 400.2 952 35.1
BraA05t19259Z Brassica rapa HOM05D003272 ORTHO05D003776 8.1e-108 396.0 463 47.3
Ca_12034_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 6.9e-107 392.9 716 38.5
CDE06G2439 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 5.8e-106 389.8 450 48.4
BcaC02g12450 Brassica carinata HOM05D003272 ORTHO05D003776 1.7e-105 388.3 906 36.1
C04p03170 Brassica napus HOM05D003272 ORTHO05D003776 1.7e-105 388.3 906 36.1
BcaB01g03430 Brassica carinata HOM05D003272 ORTHO05D003776 8.4e-105 386.0 501 45.9
C04p03190 Brassica napus HOM05D003272 ORTHO05D003776 1.1e-104 385.6 831 36.7
BcaC01g05316 Brassica carinata HOM05D003272 ORTHO05D003776 4.2e-104 383.6 472 46.0
BcaC02g12452 Brassica carinata HOM05D003272 ORTHO05D003776 9.3e-104 382.5 831 36.6
A05p02670 Brassica napus HOM05D003272 ORTHO05D003776 1.6e-103 381.7 836 36.6
Os10g0105400 Oryza sativa ssp. japonica HOM05D003272 ORTHO05D003776 8.7e-102 375.9 457 45.1
BolC3t15173H Brassica oleracea HOM05D003272 ORTHO05D003776 1.1e-101 375.6 463 45.1
A03p23500 Brassica napus HOM05D003272 ORTHO05D003776 4.3e-101 373.6 472 45.1
BolC4t21957H Brassica oleracea HOM05D003272 ORTHO05D003776 3.6e-100 370.5 859 35.5
Thhalv10016161m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 6.9e-99 366.3 914 34.7
BraA03t11566Z Brassica rapa HOM05D003272 ORTHO05D003776 9.0e-99 365.9 489 44.6
MD12G1054800 Malus domestica HOM05D003272 ORTHO05D003776 4.2e-96 357.1 397 47.1
C03p28030 Brassica napus HOM05D003272 ORTHO05D003776 5.4e-96 356.7 499 41.9
Zm00001eb009880 Zea mays HOM05D003272 ORTHO05D003776 2.7e-95 354.4 425 44.5
Ah.13g075660 Amaranthus hybridus HOM05D003272 ORTHO05D003776 7.9e-95 352.8 521 41.5
Gorai.006G143700 Gossypium raimondii HOM05D003272 ORTHO05D003776 1.8e-91 341.7 770 34.7
Gohir.D09G124800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 6.4e-89 333.2 787 34.7
HPP92_020307 Vanilla planifolia HOM05D003272 ORTHO05D003776 9.3e-88 329.3 461 41.9
TAR369G0864 Trochodendron aralioides HOM05D003272 ORTHO05D003776 1.6e-87 328.6 841 36.7
CDE07G0242 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 1.3e-81 308.9 360 47.8
Manes.08G042700 Manihot esculenta HOM05D003272 ORTHO05D003776 3.2e-80 304.3 794 34.8
Zm00001eb224410 Zea mays HOM05D003272 ORTHO05D003776 1.3e-78 298.9 769 31.9
Glyma.09G211800 Glycine max HOM05D003272 ORTHO05D003776 9.0e-75 286.2 422 42.9
Oeu046728.2 Olea europaea HOM05D003272 ORTHO05D003776 2.6e-74 284.6 426 46.5
Glyma.02G170900 Glycine max HOM05D003272 ORTHO05D003776 1.8e-70 271.9 445 42.5
Gohir.A09G128800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 3.0e-62 244.6 434 38.7
SHI31754 Sapria himalayana HOM05D003272 ORTHO05D003776 5.5e-56 223.8 267 45.3
AagrBONN_evm.TU.Sc2ySwM_344.2035 Anthoceros agrestis HOM05D003272 ORTHO05D003776 3.9e-54 217.6 229 53.3
Lj5g0000225 Lotus japonicus HOM05D003272 ORTHO05D003776 7.4e-53 213.4 233 48.5
Peaxi162Scf00003g04726 Petunia axillaris HOM05D003272 ORTHO05D003776 1.3e-52 212.6 645 33.3
VMungo1383G1563 Vigna mungo HOM05D003272 ORTHO05D003776 1.6e-50 205.7 271 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2034 Anthoceros agrestis HOM05D003272 ORTHO05D003776 1.2e-47 196.1 252 45.6
Oeu046727.1 Olea europaea HOM05D003272 ORTHO05D003776 1.4e-43 182.6 211 47.4
SHI31755 Sapria himalayana HOM05D003272 ORTHO05D003776 3.6e-39 167.9 207 46.9
Hma1.2p1_0116F.1_g056150 Hydrangea macrophylla HOM05D003272 ORTHO05D003776 1.8e-30 139.0 132 55.3
Gohir.D01G133800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.3e-25 122.1 123 52.8
Gorai.002G165500 Gossypium raimondii HOM05D003272 ORTHO05D003776 3.3e-24 118.2 123 52.0
Gohir.A09G128750 Gossypium hirsutum HOM05D003272 ORTHO05D003776 3.0e-17 95.1 129 45.0
TAR369G0389 Trochodendron aralioides HOM05D003272 ORTHO05D003776 3.4e-13 81.6 58 60.3
Cre02.g087200 Chlamydomonas reinhardtii HOM05D003272 ORTHO05D003776 3.7e-12 78.2 462 22.9
ClCG04G000910 Citrullus lanatus HOM05D003272 ORTHO05D003776 1.1e-11 76.6 522 28.7
SEGI_19750 Sequoiadendron giganteum HOM05D003272 ORTHO05D003776 5.6e-08 64.3 80 52.5
CDE07G1637 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 8.9e-06 57.0 48 66.7


User provided reference genes

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