Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.3e-30 136.0 80 100.0
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.0e-18 95.5 80 58.8
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 4.4e-18 94.4 80 57.5
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 7.4e-18 93.6 80 57.5
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.3e-17 92.8 80 57.5
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.7e-17 92.4 80 58.8
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.7e-17 92.4 80 58.8
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.7e-17 92.4 80 53.8
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.7e-17 92.4 81 58.0
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 2.8e-17 91.7 80 57.5
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 3.7e-17 91.3 80 53.8
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 4.8e-17 90.9 80 56.2
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.8e-17 90.9 80 56.2
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 4.8e-17 90.9 80 56.2
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 6.3e-17 90.5 80 55.0
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 6.3e-17 90.5 80 56.2
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 6.3e-17 90.5 79 55.7
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.1e-16 89.7 80 55.0
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.1e-16 89.7 80 55.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-16 89.4 80 53.8
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.4e-16 89.4 80 55.0
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.8e-16 89.0 78 56.4
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-16 89.0 80 55.0
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-16 89.0 80 55.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.4e-16 88.6 80 55.0
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 2.4e-16 88.6 80 52.5
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 3.1e-16 88.2 80 55.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.1e-16 88.2 80 55.0
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 3.1e-16 88.2 80 52.5
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 52.5
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 52.5
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 55.0
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 55.0
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 55.0
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 5.3e-16 87.4 80 53.8
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 5.3e-16 87.4 80 52.5
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 7.0e-16 87.0 80 53.8
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.0e-16 87.0 80 52.5
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 9.1e-16 86.7 80 52.5
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 9.1e-16 86.7 80 51.2
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 9.1e-16 86.7 80 52.5
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 9.1e-16 86.7 80 52.5
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.6e-15 85.9 81 58.0
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.6e-15 85.9 78 53.8
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.6e-15 85.9 80 51.2
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.6e-15 85.9 80 53.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.6e-15 85.9 80 53.8
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 2.0e-15 85.5 80 55.0
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 2.0e-15 85.5 54 68.5
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.0e-15 85.5 80 55.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.0e-15 85.5 80 53.8
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.6e-15 85.1 80 56.2
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 2.6e-15 85.1 79 57.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.6e-15 85.1 80 55.0
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.6e-15 85.1 47 80.9
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.6e-15 85.1 78 52.6
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.6e-15 85.1 78 52.6
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.5e-15 84.7 80 52.5
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.5e-15 84.7 80 60.0
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 4.5e-15 84.3 80 56.2
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 5.9e-15 84.0 80 52.5
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 5.9e-15 84.0 80 52.5
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 5.9e-15 84.0 81 54.3
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 5.9e-15 84.0 80 55.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 7.7e-15 83.6 47 78.7
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 7.7e-15 83.6 80 53.8
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.3e-14 82.8 81 66.7
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.3e-14 82.8 80 50.0
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.3e-14 82.8 80 51.2
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 2.2e-14 82.0 52 65.4
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.9e-14 81.6 80 55.0
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.9e-14 81.6 78 50.0
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.9e-14 81.6 74 54.1
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 3.8e-14 81.3 79 54.4
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 3.8e-14 81.3 80 48.8
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 5.0e-14 80.9 80 53.8
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 5.0e-14 80.9 80 52.5
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.0e-14 80.9 80 50.0
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 5.0e-14 80.9 80 50.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-13 79.7 80 53.8
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.1e-13 79.7 72 54.2
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.5e-13 79.3 83 56.6
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.5e-13 79.3 45 77.8
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.5e-13 79.3 79 53.2
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-13 79.3 75 57.3
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-13 79.3 75 57.3
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-13 79.3 75 57.3
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-13 79.3 75 57.3
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.5e-13 79.3 75 57.3
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.5e-13 79.3 80 51.2
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.9e-13 79.0 80 52.5
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.5e-13 78.6 75 57.3
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.5e-13 78.6 75 57.3
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 3.2e-13 78.2 45 80.0
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 3.2e-13 78.2 45 80.0
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 3.2e-13 78.2 45 80.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 3.2e-13 78.2 45 80.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 3.2e-13 78.2 81 60.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 4.2e-13 77.8 78 47.4
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.2e-13 77.8 44 79.5
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.2e-13 77.8 47 72.3
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 4.2e-13 77.8 47 70.2
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 5.5e-13 77.4 83 48.2
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 7.2e-13 77.0 80 58.8
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 7.2e-13 77.0 79 50.6
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.2e-13 77.0 45 73.3
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 9.4e-13 76.6 80 62.5
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 9.4e-13 76.6 45 75.6
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 9.4e-13 76.6 78 47.4
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 9.4e-13 76.6 45 77.8
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 9.4e-13 76.6 45 71.1
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.6e-12 75.9 45 73.3
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-12 75.9 45 75.6
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.6e-12 75.9 43 74.4
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.1e-12 75.5 45 73.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.1e-12 75.5 44 75.0
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 2.1e-12 75.5 49 67.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.1e-12 75.5 44 72.7
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.7e-12 75.1 46 71.7
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.6e-12 74.7 45 71.1
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.6e-12 74.7 80 50.0
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.6e-12 74.7 47 68.1
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.6e-12 74.7 81 63.0
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 6.1e-12 73.9 50 62.0
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 6.1e-12 73.9 47 70.2
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 6.1e-12 73.9 42 71.4
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 6.1e-12 73.9 80 60.0
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 8.0e-12 73.6 45 73.3
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 8.0e-12 73.6 80 62.5
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 8.0e-12 73.6 45 71.1
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.3e-11 72.0 45 68.9
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 8.8e-11 70.1 68 50.0
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-10 69.3 80 56.2
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 2.0e-10 68.9 79 49.4
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-10 68.6 82 58.5
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-10 68.6 82 58.5
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-10 68.6 82 58.5
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-10 68.6 82 58.5
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 2.6e-10 68.6 82 58.5
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 3.3e-10 68.2 82 57.3
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 5.7e-10 67.4 70 48.6
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 7.5e-10 67.0 79 46.8
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 7.5e-10 67.0 79 55.7
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 7.5e-10 67.0 70 44.3
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 1.3e-09 66.2 47 51.1
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-08 62.8 45 66.7
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 2.4e-08 62.0 63 49.2
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 3.5e-07 58.2 62 41.9
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.9e-07 57.4 35 62.9
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 2.9e-06 55.1 61 45.9
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 5.0e-06 54.3 63 49.2


User provided reference genes

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