Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 5.0e-72 274.2 129 100.0
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 3.1e-66 255.0 124 94.4
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 5.3e-66 254.2 124 93.5
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 5.3e-66 254.2 127 91.3
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.2e-65 253.1 127 92.1
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.5e-65 252.7 124 93.5
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.0e-65 252.3 124 91.9
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 2.0e-65 252.3 124 92.7
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.0e-65 252.3 124 92.7
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.0e-65 252.3 125 92.0
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.0e-65 252.3 125 92.0
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 2.0e-65 252.3 125 92.0
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.6e-65 251.9 124 93.5
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 2.6e-65 251.9 124 91.9
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 3.4e-65 251.5 125 91.2
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 124 93.5
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 5.9e-65 250.8 124 92.7
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 5.9e-65 250.8 124 91.9
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.9e-65 250.8 125 91.2
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 5.9e-65 250.8 124 93.5
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 5.9e-65 250.8 124 93.5
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 7.7e-65 250.4 124 91.9
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 7.7e-65 250.4 125 91.2
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.0e-64 250.0 124 91.9
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.0e-64 250.0 124 91.9
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.3e-64 249.6 124 91.1
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 90.3
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.7e-64 249.2 125 91.2
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.7e-64 249.2 125 91.2
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.1
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.1
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.1
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 90.3
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.1
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 2.9e-64 248.4 124 89.5
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 3.8e-64 248.1 122 91.8
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.8e-64 248.1 124 91.9
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 3.8e-64 248.1 124 90.3
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 3.8e-64 248.1 124 89.5
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.0e-64 247.7 124 91.1
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 5.0e-64 247.7 124 91.1
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 5.0e-64 247.7 122 91.8
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 6.5e-64 247.3 124 91.1
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 8.5e-64 246.9 124 90.3
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 8.5e-64 246.9 124 90.3
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.1e-63 246.5 124 89.5
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.1e-63 246.5 124 89.5
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.1e-63 246.5 124 91.1
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 89.5
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 91.1
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.9e-63 245.7 126 87.3
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.5e-63 245.4 124 90.3
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 3.2e-63 245.0 124 90.3
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 3.2e-63 245.0 124 91.1
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 4.2e-63 244.6 126 88.9
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 4.2e-63 244.6 126 87.3
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 5.5e-63 244.2 124 89.5
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 5.5e-63 244.2 124 90.3
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.5e-63 244.2 124 87.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 5.5e-63 244.2 124 87.9
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 7.2e-63 243.8 124 87.9
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 9.4e-63 243.4 124 88.7
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.6e-62 242.7 125 87.2
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.6e-62 242.7 125 87.2
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.6e-62 242.7 125 87.2
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.6e-62 242.7 125 87.2
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.6e-62 242.7 124 88.7
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.6e-62 242.7 124 88.7
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.6e-62 242.7 124 87.9
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 2.1e-62 242.3 124 87.1
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 2.1e-62 242.3 124 88.7
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.1e-62 242.3 124 88.7
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 4.6e-62 241.1 124 87.9
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 6.1e-62 240.7 126 88.1
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 6.1e-62 240.7 126 88.1
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 6.1e-62 240.7 126 88.1
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 6.1e-62 240.7 126 88.1
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 6.1e-62 240.7 126 88.1
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 87.3
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 87.3
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 88.7
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 88.7
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 88.7
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 87.3
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.4e-61 239.6 124 87.9
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.4e-61 239.6 124 87.9
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 1.4e-61 239.6 125 86.4
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.8e-61 239.2 124 87.9
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 2.3e-61 238.8 126 87.3
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 3.9e-61 238.0 127 84.3
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 3.9e-61 238.0 124 87.1
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 3.9e-61 238.0 125 85.6
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 5.1e-61 237.7 126 86.5
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 5.1e-61 237.7 126 86.5
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 5.1e-61 237.7 124 87.9
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 5.1e-61 237.7 124 86.3
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 6.7e-61 237.3 124 87.9
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 2.0e-60 235.7 124 86.3
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 2.6e-60 235.3 124 87.1
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 3.3e-60 235.0 125 86.4
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 4.4e-60 234.6 129 84.5
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 4.4e-60 234.6 126 86.5
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 5.7e-60 234.2 126 84.1
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 7.4e-60 233.8 126 85.7
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 7.4e-60 233.8 126 85.7
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 7.4e-60 233.8 125 83.2
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 9.7e-60 233.4 121 89.3
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 9.7e-60 233.4 121 89.3
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 1.3e-59 233.0 121 88.4
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 2.2e-59 232.3 124 83.1
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 2.2e-59 232.3 117 89.7
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 2.8e-59 231.9 149 74.5
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 8.2e-59 230.3 124 84.7
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 8.2e-59 230.3 124 84.7
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 8.2e-59 230.3 123 83.7
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 2.4e-58 228.8 126 84.1
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 6.9e-58 227.3 169 66.3
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 6.9e-58 227.3 155 71.0
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 1.0e-56 223.4 132 80.3
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.1e-55 219.9 124 79.8
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 4.2e-55 218.0 124 78.2
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 4.2e-55 218.0 136 77.9
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.6e-54 216.1 118 82.2
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 6.1e-54 214.2 122 82.8
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 6.7e-53 210.7 110 89.1
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.0e-52 209.1 112 84.8
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 2.6e-52 208.8 124 74.2
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 3.3e-52 208.4 124 72.6
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 7.4e-52 207.2 112 84.8
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 7.4e-52 207.2 107 86.9
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.1e-50 203.4 106 89.6
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.5e-47 192.2 147 65.3
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 7.5e-44 180.6 124 71.8
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.2e-43 179.1 98 86.7
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 2.2e-43 179.1 111 75.7
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 5.3e-42 174.5 87 89.7
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.6e-41 172.9 82 95.1
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 7.7e-41 170.6 134 64.9
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 1.3e-40 169.9 86 88.4
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 3.8e-40 168.3 82 92.7
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 2.5e-39 165.6 82 91.5
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 7.2e-39 164.1 82 90.2
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.6e-38 162.9 83 90.4
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 8.0e-38 160.6 77 93.5
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.4e-37 159.8 124 62.9
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.3e-37 159.1 179 48.6
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.0e-37 158.7 82 85.4
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 2.0e-36 156.0 110 70.0
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 2.6e-36 155.6 76 93.4
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 6.3e-35 151.0 126 62.7
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 3.1e-34 148.7 76 90.8
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 7.0e-34 147.5 78 87.2
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 2.5e-31 139.0 127 56.7
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 1.6e-30 136.3 73 83.6
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 4.7e-30 134.8 64 95.3
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.5e-28 129.8 75 81.3
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 3.1e-26 122.1 123 53.7
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 3.1e-26 122.1 123 53.7
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 2.7e-25 119.0 58 89.7
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 1.6e-22 109.8 58 86.2
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 2.0e-20 102.8 57 84.2
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.1e-14 82.8 42 88.1
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 9.5e-07 57.4 69 42.0


User provided reference genes

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