Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 2.4e-237 825.1 416 100.0
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 9.3e-112 407.9 412 58.3
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.1e-75 288.1 443 45.4
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 1.2e-74 284.6 386 49.7
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.7e-73 280.8 446 45.5
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.8e-70 270.8 459 43.4
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.3e-68 264.6 434 44.2
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 2.0e-66 257.3 423 43.7
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 1.7e-65 254.2 353 45.6
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 5.0e-65 252.7 398 45.7
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 2.5e-64 250.4 453 42.4
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 5.5e-64 249.2 425 43.1
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 3.6e-63 246.5 308 51.9
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.7e-63 246.1 434 41.0
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 6.7e-62 242.3 414 40.3
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 4.4e-61 239.6 463 42.1
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 5.3e-59 232.6 403 40.0
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 7.0e-59 232.3 412 42.0
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 3.5e-58 229.9 432 40.3
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.5e-58 229.9 449 39.2
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 4.5e-58 229.6 445 40.9
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 1.3e-57 228.0 417 42.2
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.9e-57 226.9 377 40.1
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 1.1e-56 224.9 445 42.0
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 1.9e-56 224.2 457 38.5
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 7.2e-56 222.2 436 41.7
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.2e-55 221.5 444 37.8
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 4.7e-55 219.5 441 40.8
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 8.0e-55 218.8 443 41.1
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 3.0e-54 216.9 298 46.3
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 4.4e-53 213.0 413 40.0
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 4.8e-52 209.5 456 39.7
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 8.2e-52 208.8 455 38.5
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 5.3e-51 206.1 459 37.5
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.0e-50 204.1 436 34.6
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 2.7e-50 203.8 402 39.8
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 5.9e-50 202.6 450 39.1
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 5.9e-50 202.6 459 37.5
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.7e-49 201.1 440 40.2
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.2e-49 200.7 425 40.5
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.9e-49 200.3 460 37.0
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 1.5e-48 198.0 407 40.3
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.5e-48 198.0 403 39.0
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.2e-47 194.9 450 37.8
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.6e-47 194.5 456 36.2
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.1e-47 194.1 458 37.3
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 3.6e-47 193.4 396 40.7
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 4.7e-47 193.0 457 37.9
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 8.0e-47 192.2 476 37.0
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 1.4e-46 191.4 397 35.8
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 4.0e-46 189.9 431 37.6
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.4e-45 186.4 450 37.3
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 7.5e-45 185.7 406 38.7
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.7e-44 184.5 430 36.5
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 3.7e-44 183.3 452 35.6
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 3.7e-44 183.3 442 36.0
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 1.8e-43 181.0 439 38.0
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.4e-43 180.6 454 35.5
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 9.1e-43 178.7 384 39.1
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 4.5e-42 176.4 465 36.3
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 2.9e-41 173.7 440 37.0
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.1e-40 171.8 425 36.0
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 1.9e-40 171.0 433 33.5
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 5.5e-40 169.5 242 43.4
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 9.5e-40 168.7 435 34.0
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 9.5e-40 168.7 413 35.4
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 2.1e-39 167.5 418 34.4
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.8e-39 167.2 225 46.2
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 3.6e-39 166.8 442 35.5
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 1.0e-38 165.2 458 32.5
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 6.8e-38 162.5 414 34.5
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 3.4e-37 160.2 411 36.5
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.3e-36 158.3 437 35.0
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.3e-36 158.3 426 37.1
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 2.2e-36 157.5 444 31.1
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 6.3e-36 156.0 251 39.8
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 8.3e-36 155.6 362 40.3
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.4e-35 154.8 428 34.8
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.4e-35 154.8 407 36.4
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 7.0e-35 152.5 448 36.2
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 9.2e-35 152.1 428 34.1
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 2.0e-34 151.0 450 36.4
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 2.3e-33 147.5 439 31.2
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 1.5e-32 144.8 437 33.4
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 9.5e-32 142.1 461 31.5
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 2.1e-31 141.0 423 32.6
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.1e-31 141.0 403 34.5
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.4e-30 138.3 425 33.9
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 2.3e-30 137.5 455 32.3
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 2.3e-30 137.5 451 35.5
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 5.2e-30 136.3 438 32.4
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.2e-29 135.2 456 32.7
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 5.7e-29 132.9 446 33.6
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 1.3e-28 131.7 221 41.6
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.7e-28 131.3 446 33.9
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 4.1e-27 126.7 444 34.9
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 7.0e-27 125.9 355 35.2
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 7.8e-26 122.5 452 28.3
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.3e-25 121.7 457 34.4
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 2.3e-25 120.9 306 38.6
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 2.5e-24 117.5 448 29.2
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 4.3e-24 116.7 430 31.4
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.6e-24 116.3 292 36.0
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 1.2e-23 115.2 457 34.6
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 3.6e-23 113.6 451 30.4
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.4e-22 111.7 428 30.6
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 2.0e-21 107.8 421 31.1
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 5.8e-21 106.3 262 38.9
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.7e-20 104.8 242 33.9
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.9e-20 103.2 242 39.3
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 6.4e-20 102.8 242 39.3
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 1.9e-19 101.3 403 30.8
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 2.4e-19 100.9 431 29.0
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.6e-18 98.2 206 35.4
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 3.5e-18 97.1 407 31.0
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 1.7e-17 94.7 201 38.8
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 5.0e-17 93.2 450 30.7
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 1.5e-16 91.7 305 32.1
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 5.2e-14 83.2 464 29.3
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 1.2e-13 82.0 427 29.5
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.4e-13 80.5 298 31.5
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 3.4e-13 80.5 393 27.5
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 7.5e-13 79.3 441 27.7
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 2.2e-12 77.8 222 33.3
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 4.9e-12 76.6 181 37.0
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 4.9e-12 76.6 243 34.2
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.4e-11 75.1 434 27.2
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 6.0e-10 69.7 358 28.2
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 7.8e-10 69.3 388 26.3
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 2.5e-08 64.3 103 38.8
MBI06_g40465_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 4.3e-08 63.5 41 78.0
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 6.2e-07 59.7 429 26.3
MBI06_g46086_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 8.1e-07 59.3 82 50.0
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 1.1e-06 58.9 447 26.2
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 1.8e-06 58.2 512 24.2
Potri.004G052900 Populus trichocarpa HOM05D058718 ORTHO05D010890 1.8e-06 58.2 431 26.2
MBI06_g25724_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 2.4e-06 57.8 62 61.3
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 3.1e-06 57.4 177 28.8
CiPaw.09G066800 Carya illinoinensis HOM05D009670 ORTHO05D010890 4.0e-06 57.0 461 24.3
SEGI_16969 Sequoiadendron giganteum HOM05D016559 ORTHO05D019650 5.2e-06 56.6 281 27.8


User provided reference genes

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