Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 9.1e-134 480.3 259 100.0
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.3e-68 263.8 281 58.0
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 1.8e-68 263.5 282 59.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 3.0e-68 262.7 254 65.0
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 3.9e-68 262.3 282 62.8
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 5.1e-68 261.9 285 58.2
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.9e-67 260.0 286 59.4
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 2.5e-67 259.6 244 63.9
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 3.3e-67 259.2 288 59.4
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.4e-65 253.1 193 71.5
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 6.9e-65 251.5 267 57.7
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.2e-64 250.8 271 56.8
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.2e-64 250.8 287 57.1
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.2e-64 250.8 289 57.1
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 2.0e-64 250.0 280 57.1
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 3.4e-64 249.2 268 57.8
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 3.4e-64 249.2 195 69.7
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 5.8e-64 248.4 285 58.2
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 5.8e-64 248.4 288 56.6
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 5.8e-64 248.4 270 59.3
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.7e-63 246.9 219 64.4
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 2.2e-63 246.5 288 54.5
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 4.9e-63 245.4 235 60.9
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 6.5e-63 245.0 272 59.2
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.1e-62 244.2 247 61.1
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.1e-62 244.2 291 55.3
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 1.4e-62 243.8 282 57.1
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 1.4e-62 243.8 214 64.5
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 3.2e-62 242.7 268 58.2
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 3.2e-62 242.7 270 58.5
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 9.3e-62 241.1 271 56.8
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 9.3e-62 241.1 288 54.5
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.2e-61 240.7 271 57.9
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 1.2e-61 240.7 243 61.3
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.6e-61 240.4 253 60.9
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.6e-61 240.4 253 60.5
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 1.6e-61 240.4 272 57.0
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.7e-61 239.6 253 60.5
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 1.0e-60 237.7 211 64.5
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.8e-60 236.9 279 56.3
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 5.1e-60 235.3 213 66.2
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 5.1e-60 235.3 275 56.0
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 6.7e-60 235.0 276 56.2
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 8.7e-60 234.6 245 59.2
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 8.7e-60 234.6 275 55.6
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 8.7e-60 234.6 275 55.6
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 8.7e-60 234.6 263 58.9
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.1e-59 234.2 208 65.9
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 1.5e-59 233.8 211 64.9
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 1.9e-59 233.4 249 59.8
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 1.9e-59 233.4 275 55.3
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.9e-59 233.4 195 65.6
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.9e-59 233.4 288 53.8
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 3.3e-59 232.6 213 64.8
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 3.3e-59 232.6 316 50.9
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 5.7e-59 231.9 288 53.5
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 5.7e-59 231.9 269 55.8
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 7.4e-59 231.5 221 61.5
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 7.4e-59 231.5 280 52.9
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 9.7e-59 231.1 281 55.5
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 1.3e-58 230.7 270 56.3
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 2.8e-58 229.6 293 53.6
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 6.3e-58 228.4 212 64.6
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.4e-57 227.3 204 64.2
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.4e-57 227.3 209 65.1
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.4e-57 226.5 220 62.3
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 2.4e-57 226.5 190 67.4
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 2.4e-57 226.5 225 60.0
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 3.1e-57 226.1 271 57.2
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 6.9e-57 224.9 209 64.1
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.2e-56 224.2 202 63.9
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 2.6e-56 223.0 212 60.8
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 2.6e-56 223.0 267 56.6
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 3.8e-55 219.2 215 60.0
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.8e-55 219.2 267 54.3
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.2e-54 216.1 219 62.1
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 7.2e-54 214.9 283 54.4
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 9.4e-54 214.5 270 53.7
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 8.8e-52 208.0 254 53.1
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.1e-51 207.6 240 56.7
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.1e-51 207.6 206 58.7
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 1.5e-51 207.2 226 55.8
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 9.7e-51 204.5 209 62.7
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 9.7e-51 204.5 256 51.6
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.4e-49 200.7 204 58.8
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.4e-49 200.7 204 58.8
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 9.1e-49 198.0 257 51.8
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 9.1e-49 198.0 257 51.8
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 9.1e-49 198.0 256 51.2
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.5e-48 197.2 209 57.9
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.7e-47 193.7 195 59.0
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.4e-46 190.7 186 65.1
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.2e-45 187.6 217 56.7
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.6e-45 187.2 254 50.8
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.1e-45 186.8 248 52.4
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.3e-44 183.3 243 52.3
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 2.6e-43 179.9 207 56.0
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 1.4e-41 174.1 276 44.9
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 5.3e-41 172.2 203 53.2
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 1.5e-40 170.6 253 46.6
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 7.2e-38 161.8 207 51.7
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 2.7e-37 159.8 272 42.3
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 5.2e-36 155.6 271 46.5
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 3.3e-35 152.9 157 58.0
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.7e-34 150.6 213 46.9
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 9.1e-33 144.8 219 45.2
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 9.1e-33 144.8 184 50.5
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 5.9e-32 142.1 131 64.1
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 7.7e-32 141.7 207 46.4
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 7.7e-32 141.7 271 41.7
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 2.2e-31 140.2 199 44.2
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 5.5e-30 135.6 121 62.0
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 1.6e-29 134.0 183 48.1
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 1.8e-28 130.6 137 57.7
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 1.8e-28 130.6 137 57.7
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 4.4e-27 125.9 102 68.6
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 1.3e-26 124.4 150 56.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 2.4e-25 120.2 162 48.1
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 5.3e-25 119.0 169 46.7
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 7.7e-24 115.2 237 39.7
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 2.6e-19 100.1 125 48.0
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 7.5e-19 98.6 152 48.0
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 1.1e-17 94.7 229 36.2
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 2.4e-17 93.6 173 39.3
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.0e-15 88.2 76 64.5
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 5.0e-15 85.9 186 38.2
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 1.5e-11 74.3 171 34.5
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 3.4e-11 73.2 74 60.8
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 3.4e-11 73.2 63 63.5
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 3.4e-11 73.2 119 45.4
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 3.7e-10 69.7 175 29.7
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 7.8e-08 62.0 52 63.5
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 1.3e-07 61.2 134 38.8
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 3.9e-07 59.7 65 56.9
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.9e-06 57.4 67 52.2
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 7.3e-06 55.5 34 79.4


User provided reference genes

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