Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 1.9e-248 862.4 569 100.0
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 1.4e-46 191.8 457 39.8
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 2.2e-39 167.9 435 38.2
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 3.8e-39 167.2 435 37.9
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 1.2e-37 162.2 436 38.1
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 2.1e-37 161.4 431 36.0
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 2.7e-37 161.0 395 35.2
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 4.6e-37 160.2 479 35.5
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 2.3e-36 157.9 450 36.9
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 3.0e-36 157.5 407 38.3
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 2.5e-35 154.5 455 38.0
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 1.2e-32 145.6 412 35.4
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 4.5e-32 143.7 448 33.5
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 4.5e-32 143.7 541 31.8
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 3.2e-30 137.5 506 32.8
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 5.4e-30 136.7 466 34.1
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 5.4e-30 136.7 441 34.0
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 2.1e-29 134.8 429 32.9
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 2.1e-29 134.8 516 31.0
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 2.7e-29 134.4 386 35.8
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 6.0e-29 133.3 462 32.7
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 2.3e-28 131.3 411 33.6
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.9e-28 130.6 454 33.9
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 5.1e-28 130.2 456 34.6
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 6.7e-28 129.8 488 31.8
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 8.7e-28 129.4 487 32.0
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 1.9e-27 128.3 454 33.3
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 1.9e-27 128.3 437 34.6
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 4.3e-27 127.1 458 34.3
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 7.4e-27 126.3 456 34.2
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 2.1e-26 124.8 471 33.3
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 3.7e-26 124.0 493 32.3
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 4.0e-25 120.6 386 32.9
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 1.5e-24 118.6 465 31.0
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 4.9e-23 113.6 523 28.3
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 3.2e-22 110.9 410 33.4
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 5.5e-22 110.2 430 32.1
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 7.1e-22 109.8 418 32.3
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 1.2e-21 109.0 670 33.1
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.6e-21 108.6 481 30.1
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 2.3e-20 104.8 422 30.1
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 3.0e-20 104.4 425 31.1
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 8.7e-20 102.8 407 31.2
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 8.7e-20 102.8 452 28.1
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 1.1e-19 102.4 519 30.8
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 3.3e-19 100.9 404 31.9
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 7.4e-19 99.8 431 29.7
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 1.6e-18 98.6 573 27.4
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 3.7e-18 97.4 526 29.8
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 6.2e-18 96.7 360 32.5
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 6.2e-18 96.7 405 32.3
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 6.2e-18 96.7 421 31.6
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 1.4e-17 95.5 524 27.5
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 2.4e-17 94.7 467 28.7
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 4.0e-17 94.0 570 26.8
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 4.0e-17 94.0 406 30.3
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 9.0e-17 92.8 406 31.0
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 1.2e-16 92.4 521 28.8
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 7.6e-16 89.7 452 27.4
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 1.3e-15 89.0 396 29.3
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 1.7e-15 88.6 411 28.2
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 2.2e-15 88.2 524 28.2
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 2.2e-15 88.2 275 36.0
PSO541G2379 Papaver somniferum HOM05D056025 ORTHO05D009211 3.8e-15 87.4 156 38.5
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 4.9e-15 87.0 409 32.3
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 3.2e-14 84.3 400 31.0
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 2.1e-13 81.6 288 31.6
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 3.5e-13 80.9 355 31.0
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 6.0e-13 80.1 415 28.7
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 7.9e-13 79.7 457 27.8
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 3.9e-12 77.4 517 28.4
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 4.3e-11 73.9 450 28.2
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 1.3e-10 72.4 365 27.7
Oeu051084.1 Olea europaea HOM05D007892 ORTHO05D009211 2.8e-10 71.2 233 30.0
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 2.8e-10 71.2 62 66.1
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 6.3e-10 70.1 87 49.4
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 8.2e-10 69.7 458 27.3
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 2.4e-09 68.2 41 80.5
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 3.1e-09 67.8 124 41.1
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 2.6e-08 64.7 565 24.4
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 5.9e-08 63.5 367 27.0
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 7.7e-08 63.2 439 26.2
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 7.7e-08 63.2 396 26.0
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 1.0e-07 62.8 358 26.3
Peaxi162Scf00069g01735 Petunia axillaris HOM05D021138 ORTHO05D009211 1.0e-07 62.8 351 27.9
SGA_v2.0_scaffold73G24235 Striga asiatica HOM05D007892 ORTHO05D009211 1.0e-07 62.8 387 27.4
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 1.3e-07 62.4 399 28.6
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 1.7e-07 62.0 351 26.8
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 2.9e-07 61.2 439 27.6
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 3.8e-07 60.8 396 26.0
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 5.5e-06 57.0 371 26.4
Zm00001eb298400 Zea mays HOM05D061528 ORTHO05D009211 5.5e-06 57.0 378 27.8
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 7.2e-06 56.6 496 28.0


User provided reference genes

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