Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 1.2e-208 729.6 364 100.0
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 4.4e-126 455.3 349 67.3
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 2.9e-125 452.6 347 67.7
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.9e-124 449.9 340 66.8
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 9.2e-124 447.6 358 64.0
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.6e-123 446.8 354 65.3
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 6.0e-123 444.9 355 64.8
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.3e-122 443.7 348 65.2
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.3e-122 443.0 317 68.8
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 2.3e-122 443.0 355 65.9
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 3.0e-122 442.6 335 65.7
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 5.1e-122 441.8 311 68.8
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 5.1e-122 441.8 348 64.7
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 5.6e-121 438.3 307 69.7
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 2.1e-120 436.4 354 62.4
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 4.7e-120 435.3 310 67.4
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.8e-119 433.3 328 66.2
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 2.4e-119 433.0 314 68.5
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 4.0e-119 432.2 354 65.5
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 8.9e-119 431.0 353 64.6
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 7.6e-118 427.9 353 63.7
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 6.4e-117 424.9 333 65.2
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 8.4e-117 424.5 361 62.0
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 2.1e-115 419.9 348 60.9
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 2.7e-115 419.5 319 65.2
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 6.6e-114 414.8 328 63.1
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.5e-113 413.7 289 71.3
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 3.6e-112 409.1 332 62.3
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 4.8e-112 408.7 307 64.5
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 6.2e-112 408.3 409 55.5
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.4e-111 407.1 404 55.0
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.4e-111 407.1 404 55.0
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 5.3e-111 405.2 249 77.5
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 6.9e-111 404.8 315 65.4
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 6.9e-111 404.8 314 61.8
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 9.9e-110 401.0 407 53.8
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 2.9e-109 399.4 309 63.8
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 3.8e-109 399.1 351 60.1
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 4.9e-109 398.7 357 59.7
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.1e-108 397.5 399 54.6
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.9e-108 396.7 386 57.0
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 5.4e-108 395.2 405 54.3
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 4.6e-107 392.1 330 59.4
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 6.0e-107 391.7 319 62.7
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 6.0e-107 391.7 348 60.1
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-105 387.5 321 61.7
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-105 387.5 321 61.7
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 5.6e-105 385.2 309 63.8
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 5.6e-105 385.2 367 58.9
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 7.3e-105 384.8 299 64.9
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 1.6e-104 383.6 388 52.8
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.1e-104 383.3 355 57.7
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 2.8e-104 382.9 310 63.5
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.8e-104 382.9 307 61.2
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 4.8e-104 382.1 312 63.8
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 8.1e-104 381.3 309 60.5
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.4e-103 379.8 294 63.3
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 4.0e-103 379.0 309 63.4
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 4.0e-103 379.0 312 61.9
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 6.9e-103 378.3 306 61.8
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.2e-102 377.5 310 62.6
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 2.6e-102 376.3 316 60.8
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 3.4e-102 375.9 318 61.9
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 7.6e-102 374.8 323 61.0
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 4.9e-101 372.1 301 61.8
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.1e-100 370.9 324 60.5
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 2.4e-100 369.8 266 67.3
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.6e-99 367.1 320 60.9
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 3.5e-99 365.9 334 59.6
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.0e-98 364.4 353 57.2
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.3e-98 364.0 295 63.7
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.3e-98 364.0 322 56.5
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.8e-98 363.6 307 59.3
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 5.6e-97 358.6 285 61.8
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 7.4e-97 358.2 341 56.9
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 9.0e-95 351.3 275 62.9
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.0e-93 347.8 310 58.1
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.0e-93 347.8 310 58.1
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.1e-92 344.4 411 48.4
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.2e-92 342.8 287 59.6
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.2e-91 340.9 352 53.4
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.2e-91 340.9 240 69.2
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 3.5e-91 339.3 305 57.7
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 3.5e-91 339.3 277 62.1
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.9e-89 333.6 273 61.2
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 1.3e-88 330.9 229 70.7
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 8.4e-85 318.2 325 51.4
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.5e-84 315.5 213 73.2
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.0e-82 311.2 351 52.4
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.3e-82 310.1 268 58.6
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 3.9e-82 309.3 324 51.2
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 8.7e-82 308.1 232 66.8
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 5.7e-81 305.4 226 63.7
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 6.3e-80 302.0 235 63.4
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 3.4e-78 296.2 223 65.0
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.0e-77 294.7 309 52.1
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 5.0e-77 292.4 307 52.8
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 6.5e-77 292.0 226 65.5
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 2.5e-76 290.0 221 65.2
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 7.9e-75 285.0 208 65.9
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.3e-73 279.6 303 49.5
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 4.3e-73 279.3 346 45.7
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 4.3e-73 279.3 228 61.0
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.3e-72 277.7 243 57.6
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.1e-67 260.4 323 45.5
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.3e-66 256.9 311 49.2
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.5e-65 254.2 323 48.3
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.8e-63 247.3 181 68.0
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 2.4e-63 246.9 177 66.1
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.5e-60 236.9 318 41.5
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 5.5e-60 235.7 151 71.5
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 2.0e-57 227.3 170 68.2
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.7e-56 224.2 262 48.9
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.8e-56 222.6 158 65.2
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.2e-51 208.0 281 42.0
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 2.8e-48 196.8 182 57.1
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 5.4e-47 192.6 218 48.6
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.1e-44 184.9 125 71.2
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 2.6e-41 173.7 160 55.0
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.2e-40 170.6 142 62.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 2.2e-32 144.1 151 49.0
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 6.3e-32 142.5 100 66.0
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.7e-29 134.4 87 73.6
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 6.1e-27 125.9 104 60.6
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.1e-23 115.2 92 63.0
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 6.0e-22 109.4 107 57.0
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.2e-15 87.0 79 50.6
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 3.9e-13 80.1 90 48.9
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 5.1e-13 79.7 65 53.8
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.3e-12 76.6 101 44.6
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 3.1e-10 70.5 81 56.8
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 8.9e-10 68.9 82 52.4
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.5e-09 68.2 39 79.5
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 7.6e-09 65.9 75 52.0
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 7.1e-07 59.3 56 55.4


User provided reference genes

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