Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 7.8e-67 257.3 161 100.0
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 4.2e-20 102.1 155 60.6
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 4.7e-19 98.6 140 60.0
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 1.1e-17 94.0 149 59.1
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 9.7e-17 90.9 146 60.3
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 1.3e-16 90.5 160 54.4
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 2.8e-16 89.4 161 52.8
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 3.7e-16 89.0 141 58.2
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 6.3e-16 88.2 157 49.7
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 8.2e-16 87.8 150 49.3
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.1e-15 85.5 165 46.7
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 4.1e-15 85.5 161 48.4
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.2e-14 84.0 165 46.7
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 2.0e-14 83.2 156 55.1
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 2.0e-14 83.2 156 55.1
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 4.5e-14 82.0 158 56.3
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 4.5e-14 82.0 166 48.8
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.0e-13 80.9 150 39.3
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 1.7e-13 80.1 149 55.7
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.7e-13 80.1 139 55.4
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.9e-13 79.3 144 41.7
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 3.8e-13 79.0 151 51.7
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 8.5e-13 77.8 168 50.6
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 8.5e-13 77.8 146 45.9
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 1.1e-12 77.4 162 52.5
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.2e-12 74.7 171 45.0
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.2e-12 74.7 171 44.4
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 7.2e-12 74.7 168 45.2
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 9.4e-12 74.3 143 49.0
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.2e-11 73.9 159 45.3
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 1.6e-11 73.6 167 38.9
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 2.1e-11 73.2 159 45.9
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 2.1e-11 73.2 153 43.8
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.0e-10 70.9 150 53.3
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 1.4e-10 70.5 153 45.8
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.3e-10 69.7 157 44.6
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 3.0e-10 69.3 153 54.9
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 3.9e-10 68.9 161 44.7
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 6.7e-10 68.2 172 44.2
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 8.8e-10 67.8 174 39.7
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 8.8e-10 67.8 139 54.7
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 2.6e-09 66.2 158 44.9
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 3.3e-09 65.9 143 36.4
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 7.4e-09 64.7 157 52.9
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 7.4e-09 64.7 148 52.7
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 7.4e-09 64.7 132 45.5
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 2.2e-08 63.2 141 56.0
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 2.8e-08 62.8 149 34.2
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 2.8e-08 62.8 164 35.4
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 2.8e-08 62.8 133 37.6
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 2.8e-08 62.8 143 33.6
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 3.7e-08 62.4 133 46.6
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 4.8e-08 62.0 141 52.5
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 6.3e-08 61.6 164 37.2
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 8.2e-08 61.2 164 36.6
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 8.2e-08 61.2 164 36.6
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 8.2e-08 61.2 170 43.5
FAN18G3731 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.1e-07 60.8 164 37.2
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 1.1e-07 60.8 143 46.9
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 1.1e-07 60.8 179 36.9
CDE03G0262 Ceratophyllum demersum HOM05D001201 ORTHO05D004477 1.4e-07 60.5 135 42.2
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 1.4e-07 60.5 158 51.9
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 1.4e-07 60.5 148 43.2
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.8e-07 60.1 138 37.7
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 1.8e-07 60.1 145 51.0
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.8e-07 60.1 147 50.3
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 1.8e-07 60.1 164 37.2
ClCG11G014290 Citrullus lanatus HOM05D026294 ORTHO05D004477 2.4e-07 59.7 146 51.4
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 2.4e-07 59.7 128 40.6
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 2.4e-07 59.7 140 31.4
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.1e-07 59.3 137 34.3
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 5.3e-07 58.5 146 34.9
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 5.3e-07 58.5 134 50.0
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 9.1e-07 57.8 139 53.2
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 9.1e-07 57.8 142 33.1
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 9.1e-07 57.8 135 33.3
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 1.2e-06 57.4 144 32.6
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.2e-06 57.4 143 34.3
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.6e-06 57.0 151 41.7
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 1.6e-06 57.0 158 41.1
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 1.6e-06 57.0 136 31.6
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 1.6e-06 57.0 135 31.9
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.0e-06 56.6 135 31.9
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.0e-06 56.6 134 48.5
PGSC0003DMG400017769 Solanum tuberosum HOM05D059644 ORTHO05D004477 2.0e-06 56.6 126 51.6
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 2.6e-06 56.2 144 31.9
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.6e-06 56.2 137 32.8
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.6e-06 56.2 137 32.8
Medtr3g099490 Medicago truncatula HOM05D008046 ORTHO05D004477 2.6e-06 56.2 132 52.3
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 3.5e-06 55.8 135 34.1
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 4.5e-06 55.5 144 29.2
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 4.5e-06 55.5 166 38.6
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 7.7e-06 54.7 147 30.6


User provided reference genes

Program Settings