Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019182 Daucus carota HOM05D012205 ORTHO05D014781 2.5e-264 914.8 444 100.0
DCAR_015677 Daucus carota HOM05D012205 ORTHO05D014781 7.1e-110 401.7 401 54.9
DCAR_016238 Daucus carota HOM05D012205 ORTHO05D014781 1.7e-100 370.5 329 60.5
DCAR_026566 Daucus carota HOM05D012205 ORTHO05D014781 1.2e-96 357.8 420 48.3
DCAR_016243 Daucus carota HOM05D012205 ORTHO05D014781 1.1e-89 334.7 335 54.3
AUR62029714 Chenopodium quinoa HOM05D012205 ORTHO05D014781 2.2e-71 273.9 351 44.2
Ah.04g150360 Amaranthus hybridus HOM05D012205 ORTHO05D014781 1.4e-70 271.2 384 43.2
EL10Ac7g17971 Beta vulgaris HOM05D012205 ORTHO05D014781 7.2e-54 215.7 338 37.6
DCAR_004702 Daucus carota HOM05D012205 ORTHO05D014781 9.1e-49 198.7 328 35.1
Os01g0278600 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.4e-28 131.7 359 27.3
Os09g0436400 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 2.0e-27 127.9 348 27.0
TPR.G27630 Trifolium pratense HOM05D012205 ORTHO05D014781 2.0e-24 117.9 164 38.4
Duzib114G0774 Durio zibethinus HOM05D006716 ORTHO05D008396 4.4e-19 100.1 330 27.0
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 9.8e-19 99.0 338 26.0
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 2.2e-18 97.8 296 27.7
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 4.9e-18 96.7 296 26.0
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 1.1e-17 95.5 288 26.7
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 1.9e-17 94.7 303 25.4
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 3.2e-17 94.0 329 24.9
Ah.08g210040 Amaranthus hybridus HOM05D006716 ORTHO05D008396 5.4e-17 93.2 356 25.8
Os09g0436700 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 5.4e-17 93.2 293 27.3
Duzib114G0950 Durio zibethinus HOM05D006716 ORTHO05D008396 1.2e-16 92.0 230 30.0
Os08g0144400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293916 1.6e-16 91.7 270 27.8
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 2.7e-16 90.9 317 26.2
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 3.5e-16 90.5 298 26.8
Potri.018G001500 Populus trichocarpa HOM05D006716 ORTHO05D008396 7.8e-16 89.4 376 27.1
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 7.8e-16 89.4 387 24.3
vmacro15746 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.3e-15 88.6 239 30.1
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 2.3e-15 87.8 298 26.5
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 5.0e-15 86.7 348 25.6
vmacro12389 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 6.6e-15 86.3 269 28.6
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 8.6e-15 85.9 308 25.6
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 1.1e-14 85.5 308 26.9
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.1e-14 85.5 335 25.4
CDE09G0722 Ceratophyllum demersum HOM05D005214 ORTHO05D005861 1.9e-14 84.7 296 23.6
Os03g0663100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D296914 1.9e-14 84.7 291 24.7
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 3.3e-14 84.0 304 25.7
ATR0743G060 Amborella trichopoda HOM05D005214 ORTHO05D005861 5.6e-14 83.2 288 25.0
Peaxi162Scf00168g01523 Petunia axillaris HOM05D006716 ORTHO05D008396 5.6e-14 83.2 289 25.3
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 7.3e-14 82.8 310 25.2
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 7.3e-14 82.8 304 26.0
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 7.3e-14 82.8 281 27.0
vmacro15747 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 9.5e-14 82.4 249 27.7
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 1.2e-13 82.0 289 24.9
CsaV3_2G006580 Cucumis sativus L. HOM05D005214 ORTHO05D005861 1.2e-13 82.0 355 24.5
vmacro12392 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.6e-13 81.6 234 28.2
SGA_v2.0_scaffold57G20300 Striga asiatica HOM05D006716 ORTHO05D008396 2.1e-13 81.3 308 26.3
vmacro15749 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.1e-13 81.3 241 28.2
CAN.G497.60 Capsicum annuum HOM05D006716 ORTHO05D008396 2.8e-13 80.9 322 23.9
Rhsim07G0026700 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.8e-13 80.9 288 24.7
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 4.7e-13 80.1 337 26.1
Nn8g40789 Nelumbo nucifera HOM05D005214 ORTHO05D005861 4.7e-13 80.1 299 24.1
Potri.013G018300 Populus trichocarpa HOM05D005214 ORTHO05D005861 4.7e-13 80.1 257 25.3
Manes.08G119000 Manihot esculenta HOM05D005214 ORTHO05D005861 6.2e-13 79.7 257 24.9
CSS0000343 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 8.1e-13 79.3 344 23.8
Migut.N02017 Erythranthe guttata HOM05D005214 ORTHO05D005861 8.1e-13 79.3 288 26.7
Sed0006034 Sechium edule HOM05D005214 ORTHO05D005861 8.1e-13 79.3 321 24.0
Lj9A119G25 Lonicera japonica HOM05D005214 ORTHO05D005861 1.1e-12 79.0 283 25.8
Lj9A35T22 Lonicera japonica HOM05D006716 ORTHO05D008396 1.1e-12 79.0 285 28.1
PSO017G6103 Papaver somniferum HOM05D006716 ORTHO05D008396 1.1e-12 79.0 224 29.5
Potri.018G001301 Populus trichocarpa HOM05D006716 ORTHO05D008396 1.1e-12 79.0 281 26.3
DCAR_022150 Daucus carota HOM05D005214 ORTHO05D005861 1.4e-12 78.6 289 24.9
ECA236G2130 Erigeron canadensis HOM05D005214 ORTHO05D005861 1.4e-12 78.6 256 25.0
Migut.N01980 Erythranthe guttata HOM05D005214 ORTHO05D005861 1.4e-12 78.6 288 26.7
Gorai.004G240000 Gossypium raimondii HOM05D005214 ORTHO05D005861 1.4e-12 78.6 289 23.5
unitig_699.g19247 Utricularia gibba HOM05D005214 ORTHO05D005861 1.4e-12 78.6 289 25.3
Ah.04g150350 Amaranthus hybridus HOM05D012205 ORTHO05D014781 1.8e-12 78.2 58 51.7
Cc00_g10460 Coffea canephora HOM05D005214 ORTHO05D005861 1.8e-12 78.2 289 24.9
Gohir.A08G209100 Gossypium hirsutum HOM05D005214 ORTHO05D005861 1.8e-12 78.2 289 23.2
Os11g0246600 Oryza sativa ssp. japonica HOM05D005214 ORTHO05D005861 1.8e-12 78.2 289 22.8
QL03p021693 Quercus lobata HOM05D005214 ORTHO05D005861 1.8e-12 78.2 257 23.7
PSO541G2582 Papaver somniferum HOM05D005214 ORTHO05D005861 2.3e-12 77.8 295 22.7
MELO3C004228.2 Cucumis melo HOM05D005214 ORTHO05D005861 3.1e-12 77.4 325 24.0
Os07g0665700 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 3.1e-12 77.4 201 29.4
Thecc.05G311500 Theobroma cacao HOM05D005214 ORTHO05D005861 3.1e-12 77.4 299 22.4
MBI07_g30867_MAGBIO Magnolia biondii HOM05D005214 ORTHO05D005861 4.0e-12 77.0 299 23.4
Medtr7g113170 Medicago truncatula HOM05D005214 ORTHO05D005861 4.0e-12 77.0 254 23.6
Gohir.D08G226000 Gossypium hirsutum HOM05D005214 ORTHO05D005861 5.2e-12 76.6 264 23.9
PSO675G4608 Papaver somniferum HOM05D005214 ORTHO05D005861 5.2e-12 76.6 273 24.5
Actinidia05683 Actinidia chinensis HOM05D005214 ORTHO05D005861 6.8e-12 76.3 257 24.9
Dinv40313 Davidia involucrata HOM05D005214 ORTHO05D005861 6.8e-12 76.3 256 24.2
Lj1g0009363 Lotus japonicus HOM05D005214 ORTHO05D005861 6.8e-12 76.3 347 23.3
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 6.8e-12 76.3 289 24.6
QL03p011667 Quercus lobata HOM05D005214 ORTHO05D005861 6.8e-12 76.3 257 23.7
FAN02G3954 Fragaria x ananassa HOM05D005214 ORTHO05D005861 8.9e-12 75.9 285 23.2
Os05g0146100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298887 8.9e-12 75.9 267 28.1
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 8.9e-12 75.9 257 24.1
arahy.Tifrunner.gnm1.ann1.0P9F65 Arachis hypogaea HOM05D005214 ORTHO05D005861 1.2e-11 75.5 260 25.0
arahy.Tifrunner.gnm1.ann1.P1V9IM Arachis hypogaea HOM05D005214 ORTHO05D005861 1.2e-11 75.5 260 25.0
CANSAT54G2509 Cannabis sativa HOM05D005214 ORTHO05D005861 1.2e-11 75.5 384 22.7
Cfa006617 Carpinus fangiana HOM05D005214 ORTHO05D005861 1.2e-11 75.5 256 23.4
Ca_05806_v3 Cicer arietinum L. HOM05D005214 ORTHO05D005861 1.2e-11 75.5 256 23.0
Haze_04156 Corylus avellana HOM05D005214 ORTHO05D007291 1.5e-11 75.1 256 23.4
Hma1.2p1_1212F.1_g267370 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 1.5e-11 75.1 285 24.2
Os05g0161400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D299027 1.5e-11 75.1 302 24.5
SalBow3G0885 Salvia bowleyana HOM05D005214 ORTHO05D005861 1.5e-11 75.1 256 24.6
Zm00001eb168260 Zea mays HOM05D005214 ORTHO05D005861 1.5e-11 75.1 297 21.9
FvH4_6g06420 Fragaria vesca HOM05D005214 ORTHO05D005861 2.0e-11 74.7 285 23.2
Thecc.05G311600 Theobroma cacao HOM05D005214 ORTHO05D005861 2.0e-11 74.7 279 23.7
TPR.G33205 Trifolium pratense HOM05D005214 ORTHO05D005861 2.0e-11 74.7 293 22.9
TWI12G1447 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 2.0e-11 74.7 311 23.8
MSTRG.27985 Avicennia marina HOM05D005214 ORTHO05D005861 2.6e-11 74.3 289 23.9
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 2.6e-11 74.3 285 22.8
HanXRQChr11g0339491 Helianthus annuus HOM05D005214 ORTHO05D005861 3.4e-11 73.9 322 22.7
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 3.4e-11 73.9 258 25.2
THA.LOC104802800 Tarenaya hassleriana HOM05D005214 ORTHO05D005861 3.4e-11 73.9 256 24.2
MD12G1215600 Malus domestica HOM05D005214 ORTHO05D005861 4.4e-11 73.6 284 25.0
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 4.4e-11 73.6 311 26.7
TWI12G0218 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 4.4e-11 73.6 300 24.0
BcaNung04541 Brassica carinata HOM05D005214 ORTHO05D005861 5.8e-11 73.2 289 24.2
Nitab4.5_0002144g0030 Nicotiana tabacum HOM05D005214 ORTHO05D005861 5.8e-11 73.2 323 22.3
AL6G39370 Arabidopsis lyrata HOM05D005214 ORTHO05D005861 7.5e-11 72.8 304 23.0
Duzib128G1190 Durio zibethinus HOM05D005214 ORTHO05D005861 7.5e-11 72.8 289 23.9
Thhalv10004245m.g Eutrema salsugineum HOM05D005214 ORTHO05D005861 7.5e-11 72.8 303 23.1
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 9.8e-11 72.4 289 24.9
DCAR_016244 Daucus carota HOM05D012205 ORTHO05D178239 9.8e-11 72.4 49 57.1
Os01g0776500 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 9.8e-11 72.4 201 28.4
Phvul.006G090500 Phaseolus vulgaris HOM05D005214 ORTHO05D005861 9.8e-11 72.4 271 25.5
AT5G27660 Arabidopsis thaliana HOM05D005214 ORTHO05D005861 1.3e-10 72.0 303 23.4
CAN.G619.10 Capsicum annuum HOM05D005214 ORTHO05D005861 1.3e-10 72.0 323 22.3
VMungo0540G0352 Vigna mungo HOM05D005214 ORTHO05D005861 1.3e-10 72.0 290 23.4
GSVIVG01031122001 Vitis vinifera HOM05D005214 ORTHO05D005861 1.3e-10 72.0 289 24.9
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 1.7e-10 71.6 289 23.2
ClCG02G015500 Citrullus lanatus HOM05D005214 ORTHO05D005861 1.7e-10 71.6 334 21.6
Ciclev10001167m.g Citrus clementina HOM05D005214 ORTHO05D005861 1.7e-10 71.6 256 23.0
SGA_v2.0_scaffold50G18515 Striga asiatica HOM05D006716 ORTHO05D008396 1.7e-10 71.6 367 24.5
Ah.10g035290 Amaranthus hybridus HOM05D006716 ORTHO05D008396 2.2e-10 71.2 244 26.6
CiPaw.07G020400 Carya illinoinensis HOM05D005214 ORTHO05D005861 2.2e-10 71.2 256 23.4
AUR62000783 Chenopodium quinoa HOM05D005214 ORTHO05D005861 2.2e-10 71.2 291 24.7
Os05g0160600 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D294322 2.2e-10 71.2 257 26.8
Peaxi162Scf00226g00716 Petunia axillaris HOM05D006716 ORTHO05D008396 2.2e-10 71.2 288 27.4
Eucgr.H04504 Eucalyptus grandis HOM05D005214 ORTHO05D005861 2.9e-10 70.9 274 24.1
Carub.0006s2493 Capsella rubella HOM05D005214 ORTHO05D005861 3.7e-10 70.5 303 22.4
Os03g0846400 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 3.7e-10 70.5 213 29.6
Sp2g20820 Schrenkiella parvula HOM05D005214 ORTHO05D005861 3.7e-10 70.5 303 22.8
Lsat_1_v5_gn_9_87421 Lactuca sativa HOM05D005214 ORTHO05D005861 4.9e-10 70.1 291 24.4
FvH4_7g05300 Fragaria vesca HOM05D005214 ORTHO05D005861 1.1e-09 68.9 279 23.7
FAN05G5708 Fragaria x ananassa HOM05D005214 ORTHO05D005861 1.1e-09 68.9 291 23.0
Os09g0436300 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.1e-09 68.9 315 21.9
TWI12G0067 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 1.1e-09 68.9 317 23.3
FAN17G2752 Fragaria x ananassa HOM05D005214 ORTHO05D005861 1.4e-09 68.6 270 24.4
MD04G1201900 Malus domestica HOM05D005214 ORTHO05D005861 1.4e-09 68.6 286 24.1
Oeu040762.1 Olea europaea HOM05D005214 ORTHO05D005861 1.4e-09 68.6 193 25.4
Aa31LG11G9400 Aethionema arabicum HOM05D005214 ORTHO05D005861 1.9e-09 68.2 249 23.3
Lalb_Chr18g0045711 Lupinus albus HOM05D005214 ORTHO05D005861 1.9e-09 68.2 289 22.5
Psat0s545g0120 Pisum sativum HOM05D005214 ORTHO05D005861 1.9e-09 68.2 225 23.1
vmacro04966 Vaccinium macrocarpon HOM05D005214 ORTHO05D005861 1.9e-09 68.2 262 23.7
Glyma.19G234200 Glycine max HOM05D005214 ORTHO05D005861 2.4e-09 67.8 289 22.1
Peaxi162Scf00663g00009 Petunia axillaris HOM05D006716 ORTHO05D008396 2.4e-09 67.8 285 22.8
AagrBONN_evm.TU.Sc2ySwM_228.3758 Anthoceros agrestis HOM05D005214 ORTHO05D005861 3.2e-09 67.4 227 24.7
Os07g0231900 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298415 3.2e-09 67.4 346 24.3
A06p37390 Brassica napus HOM05D005214 ORTHO05D005861 4.1e-09 67.0 274 23.7
C07p40960 Brassica napus HOM05D005214 ORTHO05D005861 4.1e-09 67.0 274 23.7
BolC7t44627H Brassica oleracea HOM05D005214 ORTHO05D005861 4.1e-09 67.0 274 23.7
BraA06t26663Z Brassica rapa HOM05D005214 ORTHO05D005861 4.1e-09 67.0 274 23.7
Cpa.g.sc48.81 Carica papaya HOM05D005214 ORTHO05D005861 4.1e-09 67.0 324 20.7
COL.COLO4_10501 Corchorus olitorius HOM05D005214 ORTHO05D005861 4.1e-09 67.0 271 23.6
FvH4_6g06410 Fragaria vesca HOM05D005214 ORTHO05D005861 4.1e-09 67.0 290 21.4
CARHR186180 Cardamine hirsuta HOM05D005214 ORTHO05D005861 5.4e-09 66.6 256 22.3
FAN14G2055 Fragaria x ananassa HOM05D005214 ORTHO05D005861 5.4e-09 66.6 290 21.4
Rhsim07G0186700 Rhododendron simsii HOM05D005214 ORTHO05D005861 5.4e-09 66.6 193 25.4
CBR_g39175 Chara braunii HOM05D005214 ORTHO05D005861 1.2e-08 65.5 258 22.1
Os03g0109900 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 1.2e-08 65.5 174 29.3
Os03g0221100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293029 1.2e-08 65.5 271 25.1
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 2.1e-08 64.7 339 23.3
Ah.04g150290 Amaranthus hybridus HOM05D012205 ORTHO05D014781 6.0e-08 63.2 91 39.6
DCAR_001924 Daucus carota HOM05D006716 ORTHO05D008396 1.0e-07 62.4 264 26.9
Nitab4.5_0000524g0010 Nicotiana tabacum HOM05D005214 ORTHO05D005861 1.0e-07 62.4 263 21.3
Os12g0141600 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.3e-07 62.0 177 26.6
Eucgr.L01166 Eucalyptus grandis HOM05D005214 ORTHO05D005861 2.3e-07 61.2 198 26.8
Zm00001eb408910 Zea mays HOM05D013536 ORTHO05D018072 5.1e-07 60.1 160 25.0
Eucgr.H04507 Eucalyptus grandis HOM05D005214 ORTHO05D005861 6.6e-07 59.7 198 26.3
AUR62005185 Chenopodium quinoa HOM05D005214 ORTHO05D005861 8.6e-07 59.3 226 24.3
Os08g0145600 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293310 1.1e-06 58.9 184 25.5
Os06g0142000 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 5.6e-06 56.6 175 26.3


User provided reference genes

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