Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 3.3e-57 224.9 122 100.0
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 3.1e-31 138.7 115 67.8
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 1.0e-26 123.6 119 61.3
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 1.7e-26 122.9 119 60.5
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 6.6e-26 120.9 115 58.3
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 1.1e-25 120.2 119 58.8
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 1.1e-25 120.2 118 55.1
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 1.5e-25 119.8 118 60.2
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 1.3e-24 116.7 118 59.3
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 1.3e-24 116.7 118 59.3
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 1.6e-24 116.3 115 54.8
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.4e-23 113.2 122 51.6
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 4.0e-23 111.7 115 57.4
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 4.0e-23 111.7 115 51.3
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 5.3e-23 111.3 115 53.0
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 9.0e-23 110.5 115 53.0
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 3.4e-22 108.6 118 53.4
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 3.4e-22 108.6 115 53.0
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 3.4e-22 108.6 115 51.3
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 4.4e-22 108.2 115 51.3
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 4.4e-22 108.2 117 49.6
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 9.9e-22 107.1 116 51.7
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 9.9e-22 107.1 114 51.8
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 9.9e-22 107.1 125 50.4
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 9.9e-22 107.1 114 51.8
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.3e-21 106.7 115 53.0
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 1.3e-21 106.7 115 50.4
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 1.3e-21 106.7 115 50.4
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.3e-21 106.7 122 49.2
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.3e-21 106.7 115 51.3
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 1.7e-21 106.3 115 50.4
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.7e-21 106.3 118 52.5
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 1.7e-21 106.3 118 54.2
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 2.2e-21 105.9 116 52.6
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 2.2e-21 105.9 116 52.6
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 2.9e-21 105.5 119 48.7
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 2.9e-21 105.5 115 53.0
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 2.9e-21 105.5 118 50.0
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.9e-21 105.5 115 49.6
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 2.9e-21 105.5 117 53.0
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 6.4e-21 104.4 115 53.0
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 6.4e-21 104.4 117 48.7
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 6.4e-21 104.4 120 50.0
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 6.4e-21 104.4 117 50.4
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 8.4e-21 104.0 115 49.6
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 8.4e-21 104.0 122 52.5
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 8.4e-21 104.0 115 54.8
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 1.1e-20 103.6 116 52.6
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 1.1e-20 103.6 116 50.0
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.1e-20 103.6 116 50.0
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.1e-20 103.6 116 50.0
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 1.1e-20 103.6 115 47.8
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 1.1e-20 103.6 117 47.9
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.1e-20 103.6 118 49.2
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 1.9e-20 102.8 122 47.5
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.4e-20 102.4 115 53.0
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 2.4e-20 102.4 114 47.4
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 2.4e-20 102.4 116 51.7
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.2e-20 102.1 120 50.8
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 4.2e-20 101.7 115 50.4
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.2e-20 101.7 116 49.1
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 4.2e-20 101.7 116 51.7
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 4.2e-20 101.7 116 51.7
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 4.2e-20 101.7 115 53.0
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 4.2e-20 101.7 115 46.1
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 4.2e-20 101.7 118 45.8
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 5.4e-20 101.3 115 52.2
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 5.4e-20 101.3 120 50.8
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 5.4e-20 101.3 115 52.2
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 5.4e-20 101.3 115 49.6
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 5.4e-20 101.3 121 48.8
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 5.4e-20 101.3 115 47.8
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 7.1e-20 100.9 115 49.6
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 9.3e-20 100.5 116 50.9
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 9.3e-20 100.5 114 47.4
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 9.3e-20 100.5 115 50.4
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 1.2e-19 100.1 114 47.4
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 1.6e-19 99.8 118 50.0
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 2.1e-19 99.4 115 46.1
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.1e-19 99.4 117 49.6
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.7e-19 99.0 112 50.9
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 2.7e-19 99.0 114 47.4
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.7e-19 99.0 118 50.0
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 3.5e-19 98.6 115 45.2
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 3.5e-19 98.6 103 49.5
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 6.0e-19 97.8 123 49.6
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 6.0e-19 97.8 115 50.4
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 7.9e-19 97.4 115 50.4
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 1.0e-18 97.1 114 47.4
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 1.3e-18 96.7 111 47.7
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 1.3e-18 96.7 115 49.6
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.7e-18 96.3 115 45.2
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 1.7e-18 96.3 116 49.1
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 2.3e-18 95.9 118 45.8
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 2.3e-18 95.9 115 47.0
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 5.1e-18 94.7 118 48.3
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 5.1e-18 94.7 114 50.0
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 5.1e-18 94.7 115 44.3
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 1.5e-17 93.2 115 51.3
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 1.9e-17 92.8 118 44.1
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 4.3e-17 91.7 114 44.7
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 4.3e-17 91.7 114 44.7
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 7.3e-17 90.9 124 46.8
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 9.6e-17 90.5 96 54.2
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 1.3e-16 90.1 120 45.0
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.3e-16 90.1 120 46.7
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.3e-16 90.1 124 46.0
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.3e-16 90.1 115 43.5
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 1.6e-16 89.7 119 47.9
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 1.6e-16 89.7 100 53.0
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.6e-16 89.7 115 43.5
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.1e-16 89.4 96 54.2
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.8e-16 89.0 122 48.4
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 2.8e-16 89.0 114 47.4
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 3.6e-16 88.6 120 47.5
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 3.6e-16 88.6 120 47.5
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.6e-16 88.6 119 47.1
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.6e-16 88.6 125 46.4
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 4.8e-16 88.2 119 47.1
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.8e-16 88.2 119 47.1
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 4.8e-16 88.2 119 46.2
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 4.8e-16 88.2 119 46.2
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 4.8e-16 88.2 119 46.2
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 4.8e-16 88.2 119 46.2
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 4.8e-16 88.2 119 46.2
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 6.2e-16 87.8 115 42.6
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 6.2e-16 87.8 115 42.6
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 8.1e-16 87.4 115 42.6
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 8.1e-16 87.4 115 42.6
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 8.1e-16 87.4 114 46.5
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.1e-15 87.0 115 44.3
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.1e-15 87.0 115 44.3
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 1.4e-15 86.7 115 42.6
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 1.4e-15 86.7 91 50.5
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 1.4e-15 86.7 118 45.8
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.8e-15 86.3 115 43.5
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.8e-15 86.3 118 43.2
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 1.8e-15 86.3 118 44.9
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 2.4e-15 85.9 115 43.5
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 4.0e-15 85.1 111 44.1
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 5.3e-15 84.7 121 42.1
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 6.9e-15 84.3 125 42.4
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 9.0e-15 84.0 86 50.0
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.0e-14 82.8 84 56.0
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 2.0e-14 82.8 123 44.7
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.5e-14 81.6 115 44.3
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 1.7e-13 79.7 103 48.5
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.2e-13 79.3 97 49.5
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 2.4e-12 75.9 89 46.1
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 7.1e-12 74.3 115 41.7
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 1.0e-10 70.5 114 36.0
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 1.0e-10 70.5 114 36.0
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 3.9e-10 68.6 68 57.4
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 1.1e-09 67.0 76 51.3
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 1.9e-09 66.2 92 45.7
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.9e-09 66.2 74 50.0
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.5e-09 65.9 103 42.7
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-08 63.5 72 52.8
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 5.3e-07 58.2 115 33.9
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 4.5e-06 55.1 119 37.8
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 5.8e-06 54.7 108 38.9


User provided reference genes

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