Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 2267.3 1182 100.0
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1632.8 1181 75.4
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1624.4 1218 71.6
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1583.2 1217 70.3
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1573.1 1216 69.9
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1559.7 1218 69.0
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1557.0 1212 69.3
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1534.6 1219 68.5
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1525.8 1222 67.8
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1521.1 1219 67.6
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1489.6 1263 64.0
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1487.6 1206 66.5
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1483.4 1229 65.7
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1468.0 1204 65.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1463.0 1237 64.2
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1449.9 1206 64.8
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1443.3 1224 64.1
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1442.9 1342 61.5
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1439.9 1220 63.4
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1438.7 1211 64.2
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1437.2 1264 62.7
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1433.3 1227 63.9
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1425.6 1190 65.0
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1424.5 1241 63.5
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1423.3 1234 63.5
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1422.5 1231 63.4
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1422.1 1230 62.9
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1422.1 1243 63.2
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1421.8 1223 64.3
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1421.8 1231 63.7
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1420.6 1231 63.3
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1418.7 1241 63.2
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1414.1 1219 63.7
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1411.7 1231 63.0
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1411.7 1241 62.9
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1406.3 1209 62.7
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1400.2 1221 62.7
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1399.0 1218 61.7
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1390.9 1216 61.2
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1382.9 1213 62.2
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1382.1 1217 61.8
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1380.9 1239 61.7
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1378.2 1224 62.1
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1374.8 1225 60.4
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1374.0 1219 62.6
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1372.1 1215 61.6
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1372.1 1199 62.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1372.1 1235 60.5
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1370.5 1223 60.8
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1369.0 1229 60.9
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1367.8 1240 60.4
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1367.4 1217 61.7
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1361.3 1222 60.6
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1360.9 1261 60.5
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1360.5 1247 61.1
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1360.5 1208 62.3
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1360.1 1256 60.4
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1360.1 1256 60.4
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1358.2 1243 61.2
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1357.0 1235 60.0
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1355.9 1235 59.9
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1354.3 1222 60.7
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1347.8 1235 59.7
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1343.9 1221 60.5
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1342.0 1206 61.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1340.5 1217 61.0
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1338.2 1183 62.5
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1332.4 1212 60.8
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1332.0 1215 60.7
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1330.5 1417 53.8
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1324.3 1176 63.0
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1323.1 1237 59.4
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1319.7 1215 60.3
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1317.0 1222 59.9
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1315.8 1158 61.1
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1313.9 1223 59.6
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1313.9 1223 59.6
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1313.5 1188 61.7
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1313.5 1204 60.0
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1300.8 1221 58.8
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1299.6 1207 60.2
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1298.5 1228 58.8
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1298.1 1220 58.9
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1291.6 1038 66.0
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1286.9 1226 58.3
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1282.3 1208 60.3
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1277.7 1149 60.3
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1276.5 1224 57.8
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1273.5 1173 60.3
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1270.4 1214 58.6
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1268.8 1187 59.7
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1268.1 1211 58.3
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1251.9 1161 59.9
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1226.8 1084 61.4
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1199.5 1162 57.7
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1138.6 1132 57.5
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1130.2 1075 57.5
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1094.7 1205 54.4
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1076.6 988 59.8
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 8.9e-301 1037.3 1202 51.7
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 1.9e-295 1019.6 811 67.0
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.8e-293 1013.1 777 70.4
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 5.2e-293 1011.5 1219 50.0
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.0e-280 970.7 1177 47.7
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 9.5e-279 964.1 1241 48.9
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 2.1e-262 909.8 1142 47.5
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.8e-238 829.7 697 61.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 4.1e-229 799.3 739 58.9
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.4e-228 796.2 633 65.7
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 7.2e-226 788.5 965 47.9
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-216 757.7 668 60.5
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 3.9e-216 756.1 661 59.9
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 1.5e-215 754.2 607 64.4
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.7e-214 750.7 1264 39.8
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 4.4e-207 726.1 1249 39.7
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.8e-205 720.7 710 58.9
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 5.9e-196 689.1 678 57.1
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.1e-194 684.9 1162 40.3
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 5.4e-189 666.0 604 58.9
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 6.1e-185 652.5 580 59.8
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 4.7e-177 626.3 1134 39.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.7e-174 617.8 512 62.1
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.2e-164 585.1 472 68.0
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.0e-163 582.0 471 67.7
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 3.6e-153 547.0 447 66.9
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 7.6e-127 459.5 386 65.5
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 8.4e-126 456.1 1530 29.4
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 6.2e-121 439.9 406 62.6
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 2.2e-94 351.7 483 47.0
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 2.7e-92 344.7 361 55.4
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.0e-90 338.6 301 59.1
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.0e-86 326.2 421 47.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-83 315.1 270 60.7
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.9e-78 298.1 384 46.6
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.2e-77 294.7 237 68.8
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 4.1e-72 277.7 293 51.2
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 7.7e-71 273.5 225 59.1
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 8.0e-68 263.5 208 68.3
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.2e-64 251.5 237 56.5
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.4e-48 199.5 187 59.4
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.6e-47 196.1 180 52.2
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-44 184.9 212 49.5
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.1e-43 183.3 165 61.2
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.1e-43 181.8 208 50.0
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.8e-43 180.6 171 58.5
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-42 178.7 208 49.0
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 4.4e-42 177.9 121 75.2
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.8e-42 177.6 207 48.8
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-37 162.9 136 58.8
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-35 156.0 130 59.2
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.9e-35 153.7 132 66.7
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 2.6e-34 152.1 130 58.5
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 5.8e-34 151.0 127 58.3
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 1.3e-30 139.8 104 64.4
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.2e-28 131.0 112 58.0
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.0e-22 113.6 95 70.5
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.3e-22 113.2 96 69.8
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-22 112.1 122 46.7
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.7e-17 96.3 172 39.0
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.2e-17 95.9 243 33.7
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 1.2e-15 90.1 86 65.1
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 2.7e-15 89.0 57 78.9
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 8.7e-14 84.0 63 63.5
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.3e-12 80.1 64 65.6
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.8e-12 79.0 107 50.5
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.7e-12 78.6 240 29.2
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 5.5e-08 64.7 84 42.9
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-07 63.2 132 41.7
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 2.3e-06 59.3 53 54.7
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 6.7e-06 57.8 78 56.4


User provided reference genes

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