Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.8e-114 416.0 225 100.0
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.7e-75 286.6 231 67.1
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.9e-75 285.8 231 66.7
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 4.9e-75 285.0 235 65.1
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.4e-74 282.7 231 66.7
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.4e-74 282.7 226 65.9
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 7.1e-74 281.2 232 71.6
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.2e-73 280.4 231 63.6
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.6e-73 280.0 229 66.4
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.7e-73 279.3 231 67.5
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 3.5e-73 278.9 226 71.7
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.0e-72 277.3 231 64.9
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.0e-72 277.3 231 64.9
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.7e-72 276.6 232 64.2
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.3e-72 276.2 231 64.9
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 3.9e-72 275.4 235 64.7
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 3.9e-72 275.4 225 64.9
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.9e-72 275.4 231 66.2
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.9e-72 275.4 231 65.8
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 5.1e-72 275.0 231 65.8
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 1.9e-71 273.1 235 66.4
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.3e-71 272.3 230 65.7
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 3.3e-71 272.3 231 69.3
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 7.3e-71 271.2 237 61.6
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.2e-70 270.4 237 63.7
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.6e-70 270.0 221 72.4
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 2.1e-70 269.6 222 64.9
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 2.8e-70 269.2 229 63.3
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.8e-70 269.2 231 69.7
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 2.8e-70 269.2 235 63.0
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 2.8e-70 269.2 222 72.1
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 3.6e-70 268.9 233 67.0
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 8.1e-70 267.7 227 69.6
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 8.1e-70 267.7 232 66.4
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 1.1e-69 267.3 235 65.5
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.4e-69 266.9 222 72.1
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.8e-69 266.5 231 64.1
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.8e-69 266.5 234 60.7
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 2.4e-69 266.2 232 66.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 3.1e-69 265.8 232 65.9
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 4.0e-69 265.4 228 69.3
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.0e-69 265.4 234 65.4
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 6.8e-69 264.6 226 70.8
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 6.8e-69 264.6 230 68.7
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.2e-68 263.8 223 68.2
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 2.0e-68 263.1 225 66.2
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.4e-68 261.9 215 65.1
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 5.8e-68 261.5 233 66.5
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 7.6e-68 261.2 229 65.1
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.7e-67 260.0 232 64.7
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.2e-67 259.6 232 63.8
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.2e-67 259.6 224 67.0
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.2e-67 259.6 224 67.0
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 2.9e-67 259.2 224 63.8
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 3.8e-67 258.8 233 64.8
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 4.9e-67 258.5 201 70.6
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 4.9e-67 258.5 223 68.6
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 4.9e-67 258.5 230 66.5
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 4.9e-67 258.5 221 65.2
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 6.4e-67 258.1 180 76.7
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 8.4e-67 257.7 224 68.3
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 8.4e-67 257.7 224 68.3
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 8.4e-67 257.7 224 68.3
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 8.4e-67 257.7 234 59.8
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 8.4e-67 257.7 226 64.2
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.1e-66 257.3 237 63.7
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 1.9e-66 256.5 192 73.4
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.9e-66 256.5 227 61.7
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.9e-66 256.5 225 61.3
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.9e-66 256.5 223 63.2
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.4e-66 256.1 229 61.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 5.4e-66 255.0 224 68.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.4e-66 255.0 227 60.4
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 5.4e-66 255.0 230 65.7
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 9.3e-66 254.2 228 66.2
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.2e-65 253.8 200 65.5
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.6e-65 253.4 228 65.8
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.1e-65 253.1 228 61.8
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.1e-65 253.1 200 65.0
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 2.7e-65 252.7 223 67.7
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 2.7e-65 252.7 197 72.1
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.5e-65 252.3 201 68.2
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.5e-65 252.3 228 61.4
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.6e-65 251.9 222 62.2
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 6.0e-65 251.5 228 66.2
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 6.0e-65 251.5 222 65.8
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 6.0e-65 251.5 224 67.0
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 7.8e-65 251.1 213 68.5
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.0e-64 250.8 226 64.2
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.3e-64 250.4 231 61.5
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.9e-64 248.8 223 61.9
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 6.6e-64 248.1 213 65.7
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 6.6e-64 248.1 183 74.9
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.5e-63 246.9 227 59.9
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.9e-63 246.5 191 70.7
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.5e-63 246.1 222 65.8
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.3e-61 238.4 185 69.7
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.4e-60 235.7 176 75.6
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.7e-59 233.4 199 65.3
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.2e-59 233.0 224 60.7
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.4e-59 231.5 189 67.7
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 6.4e-59 231.5 224 59.8
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 5.4e-58 228.4 181 70.7
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.6e-57 226.9 168 70.2
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 5.1e-56 221.9 225 62.7
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 8.7e-56 221.1 191 64.4
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 5.1e-48 195.3 142 68.3
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 2.5e-42 176.4 134 63.4
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 7.9e-41 171.4 192 51.6
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.1e-39 167.5 162 53.7
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.5e-39 166.4 143 57.3
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.7e-39 165.2 162 53.1
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 7.4e-39 164.9 162 53.1
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 9.6e-39 164.5 162 53.1
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.3e-38 164.1 162 51.2
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.3e-38 164.1 143 55.9
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.3e-38 164.1 143 55.9
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.3e-38 164.1 143 55.9
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.3e-38 164.1 140 57.1
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.6e-38 163.7 162 53.1
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 2.8e-38 162.9 162 52.5
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 3.7e-38 162.5 162 51.9
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 3.7e-38 162.5 162 51.9
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 8.2e-38 161.4 162 52.5
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.4e-37 160.6 144 54.2
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.9e-35 152.9 159 49.1
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 6.5e-35 151.8 229 44.5
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.9e-34 150.2 107 68.2
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.6e-30 137.1 104 76.0
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.4e-29 134.0 160 43.1
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 5.9e-28 128.6 105 73.3
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 8.5e-27 124.8 145 43.4
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-26 124.0 169 43.8
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 7.2e-26 121.7 169 40.2
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-24 117.5 193 38.9
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.9e-24 115.9 229 42.4
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 6.7e-24 115.2 133 53.4
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 8.8e-24 114.8 132 59.1
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 6.9e-21 105.1 202 38.6
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 1.2e-20 104.4 226 43.4
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 1.3e-19 100.9 167 35.9
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 4.2e-18 95.9 202 32.2
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 2.1e-17 93.6 93 57.0
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 6.1e-17 92.0 70 57.1
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.8e-16 90.5 66 65.2
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.3e-16 90.1 201 30.8
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.3e-15 86.3 100 53.0
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.7e-11 73.9 103 41.7
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.2e-11 73.6 101 43.6
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 1.5e-10 70.9 67 53.7


User provided reference genes

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