Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.1e-222 776.2 369 100.0
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.0e-77 294.7 197 73.1
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 4.7e-67 259.2 170 71.2
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.7e-67 259.2 173 71.7
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.1e-66 258.1 174 70.1
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.1e-66 256.5 173 70.5
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 6.8e-66 255.4 173 70.5
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.2e-65 254.6 207 62.3
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.3e-64 251.1 175 66.9
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 3.7e-64 249.6 203 61.6
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 4.9e-64 249.2 196 61.2
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 6.4e-64 248.8 188 64.4
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.9e-63 247.3 206 58.7
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.9e-63 247.3 170 67.1
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.2e-62 244.6 199 63.3
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.6e-62 244.2 185 62.7
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.1e-62 243.8 162 71.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.1e-62 243.8 184 64.7
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.7e-62 243.4 205 61.0
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.5e-62 243.0 175 66.3
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 3.5e-62 243.0 170 65.9
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 4.6e-62 242.7 173 65.3
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 6.0e-62 242.3 205 60.5
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.3e-61 241.1 178 64.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 5.1e-61 239.2 175 64.6
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 6.6e-61 238.8 173 66.5
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 8.6e-61 238.4 175 62.9
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.1e-60 238.0 173 63.0
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.1e-60 238.0 180 63.9
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.1e-60 238.0 173 67.1
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.5e-60 237.7 178 64.0
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.5e-60 237.7 190 62.1
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.5e-60 237.7 182 65.9
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.5e-60 237.7 176 64.2
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.9e-60 237.3 180 61.7
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.9e-60 237.3 193 61.1
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.9e-60 237.3 186 60.8
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.9e-60 237.3 173 67.1
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.5e-60 236.9 173 64.2
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.3e-60 236.5 171 64.3
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 3.3e-60 236.5 171 63.2
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.3e-60 236.1 173 62.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.3e-60 236.1 190 61.6
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 5.6e-60 235.7 210 57.1
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 5.6e-60 235.7 175 65.7
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 9.5e-60 235.0 196 60.2
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 9.5e-60 235.0 180 64.4
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.2e-59 234.6 173 65.9
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.2e-59 234.6 175 66.9
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.1e-59 233.8 187 61.0
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.1e-59 233.8 165 66.7
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.1e-59 233.8 170 65.9
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.1e-59 233.8 184 62.5
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.8e-59 233.4 189 61.9
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.6e-59 233.0 187 58.8
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 4.7e-59 232.6 195 61.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 4.7e-59 232.6 195 61.0
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.1e-58 231.5 192 58.3
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.8e-58 230.7 171 63.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.3e-58 230.3 195 60.5
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 3.1e-58 229.9 187 59.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 6.8e-58 228.8 197 59.4
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 8.9e-58 228.4 186 62.9
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.2e-57 228.0 169 63.9
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.5e-57 227.6 187 61.5
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.0e-57 227.3 198 59.1
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 2.6e-57 226.9 177 61.6
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.4e-57 226.5 196 58.7
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.4e-57 226.5 196 58.7
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 3.4e-57 226.5 178 60.7
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.4e-57 226.5 178 60.7
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 7.6e-57 225.3 175 60.6
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 9.9e-57 224.9 185 61.6
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.9e-56 223.4 174 62.1
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 4.9e-56 222.6 188 57.4
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.1e-55 221.5 183 57.9
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.1e-55 221.5 170 62.4
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.1e-55 221.5 175 58.9
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.4e-55 221.1 178 59.6
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.4e-55 220.3 178 60.7
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 4.1e-55 219.5 183 57.9
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.4e-55 219.2 182 58.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.1e-55 218.8 178 58.4
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 7.1e-55 218.8 175 57.7
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 7.1e-55 218.8 175 58.3
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.6e-54 217.6 161 67.1
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 2.1e-54 217.2 184 60.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 3.5e-54 216.5 183 57.9
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 7.8e-54 215.3 174 59.8
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.1e-53 212.6 180 58.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 6.6e-53 212.2 190 56.8
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 6.6e-53 212.2 184 58.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.6e-53 211.8 185 60.5
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.5e-52 210.3 191 57.1
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 7.3e-52 208.8 175 57.7
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.7e-51 206.1 165 63.6
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 4.7e-51 206.1 159 61.0
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 6.2e-51 205.7 180 57.8
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.4e-50 204.5 175 56.0
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.0e-50 203.0 166 60.8
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.5e-49 201.1 184 58.2
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 2.6e-49 200.3 161 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 2.9e-48 196.8 182 53.3
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 8.4e-48 195.3 177 53.7
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.4e-47 192.6 149 61.7
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-46 191.0 172 52.9
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 4.6e-46 189.5 169 55.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 6.0e-46 189.1 179 52.0
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.3e-45 187.2 181 53.0
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.1e-45 186.0 164 54.3
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-43 181.0 169 52.1
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 2.8e-43 180.3 132 68.2
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 3.6e-43 179.9 128 64.1
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 6.2e-43 179.1 164 57.3
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.8e-42 177.6 119 65.5
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 4.0e-42 176.4 112 69.6
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.3e-42 176.0 163 51.5
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.3e-42 176.0 156 54.5
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.6e-41 173.7 174 48.3
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 2.6e-41 173.7 128 65.6
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-37 161.4 135 55.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.1e-35 154.1 191 44.5
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-34 151.8 129 55.8
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-32 144.4 171 43.3
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.2e-32 144.1 179 43.0
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 6.4e-32 142.5 120 55.8
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 4.2e-31 139.8 126 57.1
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 5.4e-31 139.4 178 41.0
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 1.3e-27 128.3 173 42.2
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.8e-27 127.1 118 52.5
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 3.1e-26 123.6 90 62.2
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.5e-23 114.0 186 37.1
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.1e-21 106.3 80 61.2
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-19 101.3 88 51.1
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.1e-18 98.6 118 43.2
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.5e-09 68.2 54 59.3
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.5e-08 62.8 53 54.7
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.4e-07 61.6 43 62.8
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 4.2e-07 60.1 51 52.9
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.2e-06 58.5 102 36.3
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.2e-06 58.5 48 52.1
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.1e-06 57.8 44 59.1


User provided reference genes

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