Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.2e-103 379.8 191 100.0
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.8e-65 253.1 193 67.4
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 1.1e-64 250.4 190 66.8
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 1.6e-58 229.9 247 53.0
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 5.6e-56 221.5 185 61.6
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 1.3e-55 220.3 194 60.3
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 2.8e-55 219.2 192 60.9
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 8.1e-55 217.6 190 61.1
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 1.4e-54 216.9 190 61.1
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.1e-54 215.7 191 61.3
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 5.3e-54 214.9 190 60.0
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 9.0e-54 214.2 196 58.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.5e-53 213.4 163 63.8
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 2.0e-53 213.0 186 60.8
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 3.4e-53 212.2 182 61.0
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 1.0e-52 210.7 182 59.9
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.0e-52 210.7 158 69.0
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 1.3e-52 210.3 167 65.9
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 2.2e-52 209.5 189 57.7
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 2.9e-52 209.1 174 62.1
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 1.1e-51 207.2 192 59.4
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 3.2e-51 205.7 197 59.4
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 3.2e-51 205.7 163 65.0
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 7.1e-51 204.5 188 59.0
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 1.6e-50 203.4 191 60.7
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 2.1e-50 203.0 186 56.5
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 2.1e-50 203.0 195 56.4
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 2.7e-50 202.6 193 59.1
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 2.7e-50 202.6 192 57.3
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 3.5e-50 202.2 164 63.4
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 4.6e-50 201.8 190 56.8
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 6.0e-50 201.4 182 59.3
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 1.3e-49 200.3 180 56.7
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 1.3e-49 200.3 157 63.7
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 2.3e-49 199.5 194 56.2
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 3.0e-49 199.1 188 60.6
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 3.9e-49 198.7 188 56.9
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 3.9e-49 198.7 182 57.7
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 6.7e-49 198.0 182 55.5
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 6.7e-49 198.0 189 56.1
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 8.7e-49 197.6 182 57.7
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 8.7e-49 197.6 189 56.1
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.5e-48 196.8 153 62.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.9e-48 196.4 189 55.6
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 2.5e-48 196.1 182 58.2
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 2.5e-48 196.1 182 56.6
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.5e-48 196.1 184 54.3
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 3.3e-48 195.7 185 57.8
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 5.7e-48 194.9 170 61.2
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 1.3e-47 193.7 188 57.4
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 1.3e-47 193.7 190 53.7
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 3.7e-47 192.2 192 54.7
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 3.7e-47 192.2 188 55.9
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 1.4e-46 190.3 186 55.9
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 5.3e-46 188.3 188 55.9
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 5.3e-46 188.3 188 55.9
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 5.3e-46 188.3 188 55.9
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 6.9e-46 188.0 190 54.2
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 4.5e-45 185.3 189 55.0
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 5.9e-45 184.9 189 52.4
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 1.7e-44 183.3 188 50.0
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 6.5e-44 181.4 121 67.8
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 8.5e-44 181.0 167 55.1
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.1e-43 180.6 171 57.3
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.9e-43 179.9 142 64.1
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 2.5e-43 179.5 186 54.8
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 7.2e-43 177.9 156 57.7
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 9.3e-43 177.6 194 52.6
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 1.2e-42 177.2 174 54.6
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 1.6e-42 176.8 104 76.9
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 2.7e-42 176.0 168 55.4
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.0e-41 174.1 98 83.7
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 1.0e-41 174.1 190 51.6
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 1.3e-41 173.7 195 52.3
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 1.3e-41 173.7 141 60.3
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 2.3e-41 172.9 191 53.4
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 2.3e-41 172.9 158 59.5
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 3.9e-41 172.2 139 61.9
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 3.9e-41 172.2 190 51.6
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 5.1e-41 171.8 192 51.6
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 5.1e-41 171.8 193 49.2
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 5.1e-41 171.8 181 49.7
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 8.7e-41 171.0 191 51.8
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 3.3e-40 169.1 194 50.0
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 4.3e-40 168.7 189 53.4
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 5.7e-40 168.3 198 51.0
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 5.7e-40 168.3 195 51.3
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 9.7e-40 167.5 192 50.5
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 1.6e-39 166.8 170 50.6
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 2.8e-39 166.0 195 50.8
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 1.1e-38 164.1 191 50.8
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 2.4e-38 162.9 199 47.2
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 3.1e-38 162.5 192 52.1
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 3.1e-38 162.5 196 50.5
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 3.1e-38 162.5 158 54.4
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 3.1e-38 162.5 183 48.1
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 3.1e-38 162.5 101 73.3
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 4.1e-38 162.2 196 50.5
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 5.3e-38 161.8 115 66.1
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 5.3e-38 161.8 146 57.5
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 3.4e-37 159.1 190 50.0
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 3.4e-37 159.1 194 49.0
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 5.9e-37 158.3 84 90.5
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 2.2e-36 156.4 132 61.4
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 1.9e-35 153.3 99 69.7
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.9e-35 153.3 99 69.7
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.9e-35 153.3 99 69.7
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 1.9e-35 153.3 113 62.8
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 4.2e-35 152.1 134 58.2
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.2e-35 152.1 99 69.7
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.1e-34 148.3 92 72.8
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 7.9e-34 147.9 99 67.7
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 3.1e-30 136.0 126 52.4
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 9.1e-30 134.4 75 74.7
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 1.7e-28 130.2 87 63.2
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 1.1e-27 127.5 87 63.2
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 2.7e-26 122.9 89 59.6
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 6.7e-25 118.2 88 58.0
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.5e-24 117.1 114 48.2
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.8e-23 112.8 140 48.6
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.4e-22 109.8 92 59.8
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 7.7e-21 104.8 72 63.9
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 2.9e-20 102.8 125 44.8
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 8.5e-20 101.3 131 41.2
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 7.2e-19 98.2 101 46.5
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.2e-17 92.0 140 44.3
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 5.2e-17 92.0 101 52.5
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 2.2e-15 86.7 105 48.6
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 1.6e-13 80.5 105 41.0
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.0e-13 80.1 119 43.7
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 2.0e-13 80.1 163 35.0
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.7e-12 77.0 89 51.7
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.2e-10 70.9 70 41.4
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 4.0e-09 65.9 79 38.0
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.4e-08 62.8 76 48.7
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 4.4e-08 62.4 107 33.6
BolC6t37424H Brassica oleracea HOM05D005893 ORTHO05D007295 7.0e-06 55.1 147 34.7
SGA_v2.0_scaffold134G34742 Striga asiatica HOM05D005893 ORTHO05D007295 7.0e-06 55.1 119 31.1
THA.LOC104801664 Tarenaya hassleriana HOM05D002826 ORTHO05D003105 9.1e-06 54.7 127 29.1


User provided reference genes

Program Settings