Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 2.9e-143 511.9 268 100.0
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.7e-74 283.5 286 55.9
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 2.2e-74 283.1 274 57.7
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 8.4e-74 281.2 275 56.7
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.8e-71 273.5 283 53.7
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 4.8e-69 265.4 271 55.4
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.2e-69 265.0 271 55.4
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.2e-69 265.0 271 55.4
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.4e-68 263.8 271 55.4
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.8e-68 263.5 261 55.2
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 5.3e-68 261.9 272 54.4
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.9e-68 261.5 261 54.8
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-67 260.8 270 53.7
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-67 260.8 270 54.8
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 5.8e-67 258.5 258 56.2
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 7.6e-67 258.1 272 52.6
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.7e-66 256.9 263 52.9
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 1.7e-66 256.9 273 54.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.2e-66 256.5 271 54.6
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.9e-66 256.1 271 54.2
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 6.5e-66 255.0 260 52.3
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 6.5e-66 255.0 270 52.6
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.4e-65 253.8 263 54.4
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 4.2e-65 252.3 278 52.5
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 4.6e-64 248.8 278 52.2
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.0e-63 247.7 270 52.6
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.8e-63 246.9 264 53.0
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 1.8e-63 246.9 273 53.8
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.5e-62 243.8 261 50.2
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 3.3e-62 242.7 271 52.0
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.3e-62 242.3 274 52.6
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.3e-62 242.3 266 50.0
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.3e-61 240.7 266 51.1
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.6e-61 240.4 277 49.8
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 4.8e-61 238.8 268 51.5
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 6.3e-61 238.4 270 50.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.8e-60 236.9 256 53.1
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 4.1e-60 235.7 277 49.5
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 4.1e-60 235.7 271 47.6
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 4.1e-60 235.7 268 49.6
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 5.3e-60 235.3 266 51.9
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 2.6e-59 233.0 267 50.9
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 4.5e-59 232.3 267 49.4
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.9e-59 231.9 232 55.2
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.3e-58 230.7 273 48.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.7e-58 230.3 232 54.7
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.2e-58 229.9 261 47.9
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 3.8e-58 229.2 250 50.8
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 5.0e-58 228.8 264 47.0
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.9e-57 226.9 257 51.4
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.5e-57 226.5 252 52.4
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.5e-57 226.5 263 49.8
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 3.2e-57 226.1 267 49.1
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 4.2e-57 225.7 275 48.0
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.6e-56 223.8 265 49.4
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.1e-56 223.4 267 48.7
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 2.7e-56 223.0 266 47.4
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.8e-55 220.3 265 48.7
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.8e-55 220.3 259 49.0
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.8e-55 220.3 264 45.5
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.3e-55 219.9 242 51.7
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 3.0e-55 219.5 272 48.9
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.9e-55 219.2 270 46.3
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 3.9e-55 219.2 264 45.5
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.1e-54 217.6 264 45.5
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 2.0e-54 216.9 255 48.2
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.3e-53 214.2 258 48.8
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.7e-53 213.8 258 46.5
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 2.2e-53 213.4 257 45.5
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.7e-53 212.6 265 46.4
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.1e-52 211.1 218 55.0
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.4e-52 209.9 265 45.7
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 3.1e-52 209.5 262 47.7
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 4.1e-52 209.1 256 46.1
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.3e-52 208.8 263 46.8
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 5.3e-52 208.8 276 45.3
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 6.9e-52 208.4 267 48.3
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 6.9e-52 208.4 261 44.8
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 6.9e-52 208.4 251 49.4
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 6.9e-52 208.4 274 45.6
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.2e-51 207.6 243 50.2
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 2.0e-51 206.8 264 45.8
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 5.9e-51 205.3 272 45.6
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 5.9e-51 205.3 272 45.6
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.9e-51 205.3 185 56.2
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 5.9e-51 205.3 201 53.2
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 7.7e-51 204.9 254 45.7
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.7e-50 203.8 168 59.5
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 2.2e-50 203.4 271 46.9
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 5.0e-50 202.2 258 45.0
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 6.5e-50 201.8 262 46.9
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 8.5e-50 201.4 251 47.0
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 8.5e-50 201.4 259 46.7
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.4e-49 200.7 187 55.1
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.2e-49 199.5 261 42.5
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.2e-49 199.5 278 41.4
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.2e-49 199.5 278 41.4
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 7.2e-49 198.4 254 47.6
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.8e-47 193.7 277 45.5
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 8.8e-47 191.4 270 44.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.3e-46 189.5 170 55.9
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 3.3e-46 189.5 252 44.4
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 5.7e-46 188.7 271 44.6
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 7.4e-46 188.3 260 42.7
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 6.3e-45 185.3 252 40.9
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.4e-44 184.1 191 51.3
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.1e-44 183.0 269 43.9
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.1e-44 183.0 269 43.9
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.1e-44 183.0 178 52.8
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.1e-44 183.0 178 52.8
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 4.1e-44 182.6 253 45.8
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 7.0e-44 181.8 212 46.2
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 7.0e-44 181.8 271 44.6
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 9.1e-44 181.4 270 44.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.2e-43 181.0 269 44.6
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 2.6e-43 179.9 257 44.7
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.5e-43 179.5 254 44.1
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 7.7e-43 178.3 268 44.0
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.3e-42 177.6 191 50.3
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.7e-42 177.2 254 44.9
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 2.2e-42 176.8 261 43.7
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 5.0e-42 175.6 268 42.9
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.0e-42 175.6 268 38.8
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 8.5e-42 174.9 253 43.5
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.1e-41 174.5 268 42.9
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.4e-41 174.1 258 44.2
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 7.2e-41 171.8 207 46.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.2e-40 171.0 254 44.1
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 2.1e-40 170.2 183 47.0
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 2.7e-40 169.9 258 41.5
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 8.0e-40 168.3 263 41.1
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.0e-39 167.9 159 51.6
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 1.4e-39 167.5 249 39.8
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 7.4e-38 161.8 258 39.1
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.2e-37 160.2 151 52.3
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 3.7e-37 159.5 275 41.1
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.1e-36 157.9 258 39.5
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.8e-36 157.1 278 37.1
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 2.9e-34 149.8 169 52.1
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 6.5e-34 148.7 116 61.2
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 8.5e-34 148.3 256 37.5
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 3.6e-32 142.9 117 59.0
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-31 141.0 105 64.8
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.7e-30 135.6 130 49.2
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.2e-29 133.7 149 47.7
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.7e-24 116.7 206 40.3
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.4e-23 114.4 127 41.7
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 7.5e-22 108.6 173 42.8
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.3e-21 107.8 113 47.8
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.1e-20 103.2 81 61.7
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 2.0e-14 84.0 290 25.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.6e-14 83.6 72 54.2
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 6.3e-13 79.0 196 29.6
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 8.3e-13 78.6 177 31.6
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.2e-11 74.7 90 33.3
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.0e-10 71.6 253 26.5
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 8.6e-10 68.6 95 32.6
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 5.6e-09 65.9 267 27.7


User provided reference genes

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