Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 4.0e-257 891.0 456 100.0
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 7.1e-73 278.9 475 40.6
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.7e-72 276.9 475 39.8
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 6.2e-69 265.8 472 38.6
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.3e-66 258.1 487 39.0
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.9e-65 254.2 460 37.4
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 9.3e-65 251.9 484 38.2
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 8.7e-63 245.4 472 36.9
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 2.4e-60 237.3 458 34.5
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 3.8e-58 229.9 469 35.8
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.1e-57 228.4 476 35.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.4e-57 228.0 464 35.3
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 3.2e-57 226.9 465 35.7
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.1e-56 224.2 470 35.1
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.0e-55 220.3 475 35.4
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 5.1e-55 219.5 494 35.6
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.5e-54 217.2 546 31.9
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.3e-53 214.9 465 34.0
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 4.8e-53 213.0 478 35.6
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 2.0e-51 207.6 490 33.3
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 3.4e-51 206.8 546 31.7
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 5.9e-51 206.1 542 34.3
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 5.9e-51 206.1 528 32.6
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 7.7e-51 205.7 475 34.7
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.0e-50 205.3 564 30.7
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.3e-50 204.9 475 33.5
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.2e-50 204.1 476 33.6
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 2.9e-50 203.8 480 34.8
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.8e-50 203.4 517 32.3
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 5.0e-50 203.0 517 32.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 6.5e-50 202.6 506 32.4
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 6.5e-50 202.6 555 29.5
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 6.5e-50 202.6 524 31.9
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 4.2e-49 199.9 504 33.9
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 5.5e-49 199.5 473 34.7
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.6e-48 198.0 457 32.2
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 2.1e-48 197.6 517 32.9
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.7e-48 197.2 524 31.3
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 7.9e-48 195.7 517 31.1
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 8.8e-47 192.2 517 31.5
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.3e-46 190.3 516 31.6
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 7.4e-46 189.1 527 31.3
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.3e-45 188.3 502 32.3
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 4.8e-45 186.4 519 30.8
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.1e-44 185.3 471 32.5
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 2.4e-44 184.1 517 30.6
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 1.2e-43 181.8 492 30.3
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.0e-43 181.0 532 29.9
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 2.0e-43 181.0 461 33.6
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 3.4e-43 180.3 518 31.1
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.3e-42 178.3 469 33.5
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 8.5e-42 175.6 166 56.6
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.1e-41 175.3 492 30.7
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.9e-41 174.5 507 31.8
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 1.2e-40 171.8 504 32.1
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 3.6e-40 170.2 478 32.0
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.7e-40 169.9 553 28.8
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.8e-39 167.9 462 32.3
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 2.3e-39 167.5 525 27.0
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 2.3e-39 167.5 512 30.9
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 6.7e-39 166.0 523 29.1
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 6.7e-39 166.0 517 32.1
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.5e-38 164.9 591 29.8
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 2.6e-38 164.1 542 28.2
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 3.3e-38 163.7 578 28.5
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 7.4e-38 162.5 285 37.5
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 9.7e-38 162.2 532 30.3
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 6.3e-37 159.5 507 31.4
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.1e-36 157.1 519 31.2
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 5.3e-36 156.4 549 28.1
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 7.0e-36 156.0 482 31.3
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 4.5e-35 153.3 520 28.8
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 4.5e-35 153.3 534 27.5
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 5.9e-35 152.9 539 28.0
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 7.7e-35 152.5 536 30.4
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.0e-34 152.1 523 30.0
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 1.7e-34 151.4 459 30.9
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 2.2e-34 151.0 490 31.0
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 3.8e-34 150.2 485 31.5
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 3.8e-34 150.2 485 31.5
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.4e-33 148.3 546 28.4
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 5.5e-33 146.4 481 33.1
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 5.5e-33 146.4 514 28.8
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 9.4e-33 145.6 165 46.7
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 4.7e-32 143.3 504 28.6
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.0e-31 142.1 500 30.0
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.4e-31 141.7 544 29.2
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 3.9e-31 140.2 528 29.5
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.9e-31 140.2 309 33.7
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.1e-30 138.7 522 29.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 1.5e-30 138.3 555 28.5
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 2.6e-30 137.5 299 36.1
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 3.3e-30 137.1 166 45.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 4.4e-30 136.7 171 45.6
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 7.4e-30 136.0 482 31.3
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 1.3e-29 135.2 106 60.4
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.7e-29 134.8 526 29.3
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.7e-29 134.8 470 28.1
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 2.8e-29 134.0 480 30.8
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 4.8e-29 133.3 157 49.0
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 7.7e-27 125.9 465 27.5
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 5.0e-26 123.2 539 26.5
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 1.5e-25 121.7 170 42.4
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 5.5e-25 119.8 308 30.5
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 1.2e-24 118.6 425 26.8
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.3e-23 114.4 157 40.1
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 4.4e-22 110.2 348 29.0
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 7.5e-22 109.4 382 29.8
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 9.1e-20 102.4 89 56.2
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 2.2e-18 97.8 71 64.8
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 9.4e-17 92.4 92 53.3
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.2e-16 92.0 91 53.8
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 2.1e-16 91.3 74 59.5
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 2.7e-16 90.9 71 62.0
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 4.7e-16 90.1 440 26.1
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 8.0e-16 89.4 459 24.8
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 4.0e-15 87.0 452 24.8
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.2e-14 85.5 177 34.5
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 3.8e-10 70.5 210 23.8
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 8.6e-10 69.3 79 38.0
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 1.9e-09 68.2 86 38.4
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 2.5e-09 67.8 85 40.0
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 3.3e-09 67.4 73 41.1
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 3.3e-09 67.4 96 36.5
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 5.5e-09 66.6 93 38.7
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 9.5e-09 65.9 86 37.2
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 9.5e-09 65.9 61 45.9
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.6e-08 65.1 86 36.0
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 2.8e-08 64.3 86 34.9
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 3.6e-08 63.9 96 35.4
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 3.6e-08 63.9 85 37.6
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 4.7e-08 63.5 108 38.9
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 4.7e-08 63.5 119 34.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 6.1e-08 63.2 94 34.0
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 6.1e-08 63.2 80 37.5
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 6.1e-08 63.2 104 33.7
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 8.0e-08 62.8 86 36.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.0e-07 62.4 86 33.7
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 1.0e-07 62.4 91 34.1
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 1.0e-07 62.4 149 28.2
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.4e-07 62.0 63 44.4
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.4e-07 62.0 86 34.9
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.4e-07 62.0 76 39.5
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.4e-07 62.0 77 33.8
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 1.4e-07 62.0 73 43.8
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.8e-07 61.6 76 39.5
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 2.3e-07 61.2 203 24.1
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.3e-07 61.2 80 35.0
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 3.0e-07 60.8 85 31.8
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 4.0e-07 60.5 70 40.0
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 4.0e-07 60.5 77 35.1
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 6.8e-07 59.7 134 27.6
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 8.9e-07 59.3 69 40.6
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 8.9e-07 59.3 85 30.6
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 8.9e-07 59.3 85 37.6
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 8.9e-07 59.3 96 31.2
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.2e-06 58.9 76 35.5
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 1.2e-06 58.9 94 33.0
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.5e-06 58.5 63 42.9
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.5e-06 58.5 191 23.6
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 1.5e-06 58.5 84 33.3
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.5e-06 58.5 87 34.5
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 2.0e-06 58.2 127 29.9
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 2.0e-06 58.2 294 24.1
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.0e-06 58.2 55 45.5
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.6e-06 57.8 180 29.4
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 3.4e-06 57.4 128 30.5
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 3.4e-06 57.4 128 30.5
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 3.4e-06 57.4 63 42.9
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 3.4e-06 57.4 118 31.4
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 5.7e-06 56.6 52 46.2
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 5.7e-06 56.6 67 38.8
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 7.5e-06 56.2 80 28.8
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 7.5e-06 56.2 84 33.3


User provided reference genes

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