Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 3.1e-187 658.3 330 100.0
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 1.1e-99 367.5 339 57.8
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 4.6e-98 362.1 334 56.6
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 3.0e-97 359.4 333 56.2
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 8.7e-97 357.8 302 59.6
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 8.7e-97 357.8 337 55.5
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 2.1e-95 353.2 337 55.5
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 3.7e-95 352.4 337 54.3
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 1.4e-94 350.5 343 53.9
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 2.4e-94 349.7 341 54.5
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 6.9e-94 348.2 334 53.6
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 9.0e-94 347.8 329 56.5
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 1.2e-93 347.4 334 53.6
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.2e-93 347.4 334 53.6
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 1.7e-92 343.6 334 54.8
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 4.2e-91 339.0 334 53.6
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 1.6e-90 337.0 325 54.5
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 1.0e-89 334.3 306 55.2
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 1.5e-88 330.5 333 51.1
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 9.7e-88 327.8 310 52.6
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 1.8e-86 323.6 333 53.2
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 5.3e-86 322.0 354 48.9
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 6.9e-86 321.6 355 49.3
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 9.0e-86 321.2 333 51.1
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 9.0e-86 321.2 340 49.7
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 3.4e-85 319.3 334 51.5
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 5.9e-85 318.5 319 53.9
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 5.9e-85 318.5 333 51.1
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.3e-84 317.4 340 50.9
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 1.3e-84 317.4 339 50.4
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 1.7e-84 317.0 337 48.7
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 2.5e-83 313.2 341 50.1
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 2.5e-83 313.2 320 49.7
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 1.6e-82 310.5 339 50.1
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 2.7e-82 309.7 330 48.5
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 1.4e-81 307.4 352 48.0
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.4e-81 307.4 330 48.5
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 3.0e-81 306.2 338 49.7
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 3.0e-81 306.2 334 49.4
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 3.9e-81 305.8 330 47.9
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 5.1e-81 305.4 339 49.0
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 1.5e-80 303.9 339 49.3
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 4.3e-80 302.4 337 49.0
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 5.7e-80 302.0 339 47.2
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 7.4e-80 301.6 328 50.3
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 9.7e-80 301.2 342 46.8
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 1.7e-79 300.4 331 48.6
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.7e-79 300.4 263 56.7
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 2.2e-79 300.1 342 48.8
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 2.8e-79 299.7 333 49.2
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 3.7e-79 299.3 337 47.5
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 4.8e-79 298.9 340 48.2
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 1.4e-78 297.4 295 52.9
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 4.1e-78 295.8 386 45.1
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 9.1e-78 294.7 337 48.1
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 2.6e-77 293.1 339 47.5
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 7.7e-77 291.6 337 48.1
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 1.0e-76 291.2 337 47.5
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.3e-76 290.8 304 48.7
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 2.9e-76 289.7 289 55.4
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 3.8e-76 289.3 341 47.2
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 8.5e-76 288.1 341 46.9
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 8.5e-76 288.1 339 49.9
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 2.5e-75 286.6 333 47.1
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 9.4e-75 284.6 342 45.6
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 4.7e-74 282.3 320 48.1
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 1.0e-73 281.2 336 47.3
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 1.0e-73 281.2 334 46.1
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 1.8e-73 280.4 352 47.4
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 2.3e-73 280.0 260 57.7
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 3.9e-73 279.3 366 43.2
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 5.1e-73 278.9 339 44.8
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 8.8e-73 278.1 343 44.3
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 1.1e-72 277.7 355 44.2
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 1.1e-72 277.7 334 46.1
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 2.8e-71 273.1 322 45.0
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 2.8e-71 273.1 356 44.9
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 8.2e-71 271.6 347 45.2
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 1.1e-70 271.2 356 43.3
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 1.5e-69 267.3 362 41.2
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 2.6e-69 266.5 322 45.3
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 3.5e-69 266.2 356 43.5
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 3.5e-69 266.2 365 40.8
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 4.5e-69 265.8 365 41.6
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 4.5e-69 265.8 357 42.3
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 5.9e-69 265.4 367 41.1
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.3e-68 264.2 319 45.1
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 1.7e-68 263.8 368 42.7
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 2.2e-68 263.5 364 40.4
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 2.2e-68 263.5 362 43.6
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 2.9e-68 263.1 357 41.2
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 3.8e-68 262.7 345 44.3
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 5.0e-68 262.3 322 44.7
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 1.1e-67 261.2 352 44.6
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 4.7e-66 255.8 328 42.1
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 1.0e-65 254.6 322 42.9
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 3.0e-65 253.1 381 39.6
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 2.6e-61 240.0 329 42.6
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 1.7e-60 237.3 323 41.8
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 7.2e-59 231.9 217 51.6
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 4.5e-53 212.6 340 38.5
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 8.5e-52 208.4 340 37.9
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 5.4e-46 189.1 288 40.3
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 9.1e-46 188.3 321 37.7
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 9.1e-46 188.3 322 37.6
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 3.8e-44 183.0 179 52.0
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 2.5e-43 180.3 191 47.1
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.8e-41 174.1 244 39.3
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 4.6e-37 159.5 213 40.4
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 1.0e-36 158.3 207 40.6
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.9e-36 156.4 210 39.0
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.9e-35 154.1 210 38.6
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.5e-35 153.7 219 39.3
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.5e-35 153.7 213 37.6
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.0e-33 148.3 212 36.8
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.4e-33 147.9 206 37.9
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.4e-32 142.9 214 36.9
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.4e-30 137.9 268 34.3
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 6.6e-28 129.0 219 38.8
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.6e-26 124.4 151 41.1
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.4e-25 121.3 121 49.6
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 3.1e-25 120.2 179 36.3
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.7e-20 104.4 81 58.0
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 1.5e-19 101.3 114 46.5
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 1.7e-15 87.8 129 38.0
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 7.3e-11 72.4 111 39.6


User provided reference genes

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