Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 2.3e-82 308.9 165 100.0
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 2.3e-82 308.9 165 100.0
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 5.0e-77 291.2 162 95.7
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 5.0e-77 291.2 162 95.7
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 5.0e-77 291.2 162 95.7
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 5.0e-77 291.2 162 95.7
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 5.0e-77 291.2 162 95.7
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 5.0e-77 291.2 162 95.7
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 5.0e-77 291.2 162 95.7
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 8.0e-75 283.9 162 92.0
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 8.0e-75 283.9 162 92.0
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 1.4e-74 283.1 162 93.2
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 2.3e-74 282.3 160 93.8
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 8.8e-74 280.4 162 91.4
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 2.0e-73 279.3 161 91.3
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 2.0e-73 279.3 161 91.3
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 2.0e-73 279.3 161 91.3
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 2.0e-73 279.3 161 91.3
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 2.0e-73 279.3 161 91.3
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 2.0e-73 279.3 161 91.3
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 3.4e-73 278.5 154 96.1
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 4.4e-73 278.1 162 90.7
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 9.8e-73 276.9 162 90.1
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 9.8e-73 276.9 162 90.1
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 9.8e-73 276.9 162 90.1
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 9.8e-73 276.9 162 90.1
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 9.8e-73 276.9 162 90.1
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 9.8e-73 276.9 162 90.1
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 9.8e-73 276.9 162 90.1
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.3e-72 276.6 162 82.1
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 2.2e-72 275.8 158 93.0
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 2.2e-72 275.8 158 93.0
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 2.2e-72 275.8 158 93.0
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 2.2e-72 275.8 158 93.0
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 2.2e-72 275.8 158 93.0
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 2.2e-72 275.8 158 93.0
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 2.2e-72 275.8 158 93.0
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 2.8e-72 275.4 162 89.5
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 92.4
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 3.7e-72 275.0 162 89.5
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 3.7e-72 275.0 158 93.0
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 3.7e-72 275.0 158 93.0
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 4.9e-72 274.6 162 89.5
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 4.9e-72 274.6 162 89.5
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 4.9e-72 274.6 163 90.2
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.3e-72 273.9 160 90.6
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.3e-72 273.9 160 90.6
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 8.3e-72 273.9 160 90.6
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 1.1e-71 273.5 158 92.4
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.4e-71 271.2 164 87.2
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.4e-71 271.2 164 87.2
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 2.0e-70 269.2 158 90.5
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 2.9e-69 265.4 155 91.0
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 2.9e-69 265.4 163 87.7
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 2.5e-68 262.3 162 86.4
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.5e-68 262.3 160 80.0
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 4.3e-68 261.5 158 88.6
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-67 259.6 160 85.6
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 2.1e-67 259.2 161 86.3
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 2.1e-67 259.2 161 86.3
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-62 243.4 162 77.2
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 2.7e-62 242.3 162 81.5
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 4.6e-62 241.5 152 86.8
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 6.6e-61 237.7 140 92.1
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 6.6e-61 237.7 158 75.9
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 5.6e-60 234.6 140 91.4
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 5.6e-60 234.6 140 91.4
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 5.6e-60 234.6 140 91.4
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.6e-59 233.0 142 79.6
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.0e-58 228.4 160 79.4
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 2.0e-57 226.1 133 82.7
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 9.8e-57 223.8 129 93.8
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-55 219.5 154 74.7
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 1.9e-55 219.5 131 81.7
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 1.6e-54 216.5 161 66.5
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-51 206.8 102 96.1
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.1e-50 203.8 119 93.3
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.4e-50 203.4 154 75.3
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.8e-50 203.0 122 91.0
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 3.1e-50 202.2 130 86.2
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 3.1e-50 202.2 102 94.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 3.1e-50 202.2 102 94.1
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.2e-50 201.4 134 83.6
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 3.4e-49 198.7 99 94.9
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 7.5e-49 197.6 114 93.9
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 8.3e-48 194.1 136 72.8
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 7.1e-47 191.0 113 91.2
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 7.1e-47 191.0 113 91.2
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.0e-45 187.2 97 91.8
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 1.3e-45 186.8 97 90.7
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 1.7e-45 186.4 161 63.4
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 6.6e-45 184.5 136 71.3
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 3.6e-43 178.7 95 88.4
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-42 177.2 94 87.2
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 1.4e-42 176.8 94 87.2
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 1.4e-42 176.8 94 87.2
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 2.3e-42 176.0 92 89.1
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 2.3e-42 176.0 92 89.1
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.3e-42 176.0 92 90.2
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 5.2e-42 174.9 100 95.0
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 6.8e-42 174.5 94 86.2
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 8.9e-42 174.1 91 89.0
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.2e-41 173.7 99 83.8
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.6e-41 172.6 98 95.9
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 7.6e-41 171.0 91 87.9
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.9e-40 168.3 124 68.5
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.4e-39 164.9 83 92.8
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.2e-39 164.1 95 81.1
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.0e-38 161.4 136 62.5
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 1.3e-37 160.2 92 80.4
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 5.1e-37 158.3 95 77.9
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 6.6e-37 157.9 92 82.6
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 6.6e-37 157.9 94 80.9
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 6.6e-37 157.9 155 52.9
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.9e-36 156.4 94 79.8
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 2.1e-35 152.9 92 79.3
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.1e-35 152.9 92 79.3
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.1e-35 152.9 92 79.3
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 8.1e-35 151.0 91 81.3
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 1.2e-33 147.1 91 78.0
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 1.5e-33 146.7 76 92.1
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 9.9e-33 144.1 86 80.2
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 2.9e-32 142.5 85 80.0
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 6.4e-32 141.4 158 50.6
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 6.0e-30 134.8 72 88.9
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-29 132.9 105 67.6
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-28 130.2 69 89.9
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.5e-28 129.4 65 93.8
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 9.6e-28 127.5 117 61.5
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 1.2e-25 120.6 65 86.2
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 2.2e-24 116.3 73 78.1
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 6.0e-22 108.2 89 58.4
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 7.9e-22 107.8 150 44.7
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 3.9e-21 105.5 76 71.1
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 3.6e-19 99.0 76 65.8
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 4.8e-19 98.6 81 60.5
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 8.1e-19 97.8 70 65.7
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-18 97.4 54 85.2
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.1e-18 97.4 74 70.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 2.4e-18 96.3 72 66.7
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 3.1e-18 95.9 54 83.3
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 4.0e-18 95.5 53 84.9
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 4.0e-18 95.5 64 70.3
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 2.6e-17 92.8 53 83.0
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.4e-15 86.3 48 87.5
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 4.2e-15 85.5 43 93.0
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-15 85.1 114 44.7
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.0e-14 81.6 41 92.7
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 1.3e-13 80.5 45 82.2
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 3.0e-13 79.3 55 69.1
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 4.3e-12 75.5 47 72.3
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 9.6e-12 74.3 61 59.0
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 2.1e-11 73.2 44 81.8
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 2.4e-10 69.7 52 65.4
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 5.3e-10 68.6 35 88.6
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 5.3e-10 68.6 46 71.7
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 2.7e-06 56.2 121 38.0


User provided reference genes

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