Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 0.0e+00 1295.8 674 100.0
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.8e-274 949.1 675 73.2
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.1e-268 929.9 675 71.6
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.3e-268 927.9 670 70.7
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 6.9e-266 920.6 675 70.7
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 9.0e-266 920.2 674 70.0
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.5e-265 919.5 701 69.8
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 3.8e-264 914.8 669 69.2
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 2.5e-260 902.1 675 68.3
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 7.4e-260 900.6 719 66.5
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 1.8e-258 896.0 676 68.5
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 2.6e-257 892.1 682 68.0
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 7.6e-257 890.6 676 68.8
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.2e-254 883.2 675 68.6
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 3.5e-254 881.7 695 67.2
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.0e-253 880.2 675 66.8
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 2.2e-251 872.5 675 68.1
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 2.0e-249 865.9 673 66.6
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 2.9e-248 862.1 671 66.9
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 3.2e-247 858.6 687 65.4
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 6.1e-246 854.4 675 65.5
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 2.8e-243 845.5 676 65.4
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 3.7e-243 845.1 678 64.3
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.4e-242 842.4 676 65.2
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 4.1e-242 841.6 671 65.9
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 9.1e-242 840.5 673 64.2
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.4e-241 838.6 676 64.8
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 7.7e-241 837.4 672 65.5
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 2.2e-240 835.9 672 65.5
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 1.4e-239 833.2 677 64.5
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 3.6e-238 828.6 670 64.5
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 6.1e-238 827.8 677 64.1
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.3e-237 825.9 674 63.6
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 6.7e-237 824.3 729 61.3
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 8.8e-237 823.9 672 62.1
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 4.8e-235 818.1 676 63.6
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 5.9e-233 811.2 683 62.7
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 7.7e-233 810.8 674 63.5
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 2.2e-232 809.3 713 61.0
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 3.8e-232 808.5 677 63.7
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 2.5e-231 805.8 676 62.4
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.2e-231 805.4 631 66.7
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.6e-230 803.1 677 63.5
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 2.7e-230 802.4 671 61.3
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 6.7e-229 797.7 601 67.9
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 1.1e-228 797.0 677 62.2
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 4.4e-228 795.0 668 63.0
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 6.3e-227 791.2 679 61.1
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 2.4e-226 789.3 677 61.4
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 4.5e-225 785.0 675 61.0
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 1.0e-224 783.9 672 60.7
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.5e-223 780.0 673 59.7
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.6e-222 776.5 677 60.3
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 2.1e-222 776.2 674 61.0
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 2.0e-220 769.6 675 60.7
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 2.6e-220 769.2 680 61.5
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.8e-219 765.8 674 60.7
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 6.3e-219 764.6 672 61.0
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 8.2e-219 764.2 627 63.3
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.5e-217 758.8 674 60.1
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 3.2e-215 752.3 678 58.7
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 3.2e-215 752.3 674 60.7
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 5.5e-215 751.5 671 58.7
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.2e-214 750.4 683 58.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 2.1e-214 749.6 681 58.9
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 2.3e-213 746.1 686 58.5
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.2e-212 743.8 677 58.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.1e-210 737.3 487 74.7
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.7e-208 729.9 683 58.0
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 5.0e-208 728.4 680 57.2
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.5e-207 726.1 680 57.1
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 5.5e-207 724.9 607 63.4
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 4.7e-206 721.8 675 59.7
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 1.4e-205 720.3 680 56.5
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 8.9e-205 717.6 623 62.1
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.7e-203 713.4 679 56.0
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.5e-201 705.7 677 57.3
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 5.9e-201 704.9 605 62.3
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 4.3e-199 698.7 683 57.0
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 2.8e-198 696.0 662 57.4
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 3.6e-198 695.7 676 56.2
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.4e-197 693.7 669 56.5
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 1.7e-195 686.8 671 55.0
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 6.4e-195 684.9 677 56.6
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.2e-193 680.6 619 59.3
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.1e-189 667.5 499 68.1
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 6.0e-185 651.7 577 60.1
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 7.5e-180 634.8 678 51.3
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.7e-179 633.6 681 52.6
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 4.9e-179 632.1 707 50.9
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 5.1e-176 622.1 682 50.0
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.7e-168 597.0 636 52.7
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 6.9e-165 585.1 663 50.8
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 3.0e-160 569.7 624 51.0
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 5.6e-151 538.9 612 50.3
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 4.8e-134 482.6 700 42.7
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.1e-129 467.2 299 72.6
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 6.3e-126 455.7 477 50.3
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 6.1e-121 439.1 713 41.2
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 2.6e-116 423.7 281 71.2
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 9.4e-114 415.2 358 57.8
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 1.2e-71 275.4 218 62.8
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.4e-71 273.9 300 56.3
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.1e-45 189.1 103 83.5
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-44 185.7 103 82.5
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.3e-42 177.6 122 68.9
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.3e-42 177.2 99 80.8
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.1e-34 152.5 431 32.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.1e-32 144.4 102 67.6
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.1e-32 144.4 102 66.7
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.8e-19 102.1 199 38.7
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 8.2e-17 93.2 327 27.2
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.6e-12 77.4 70 52.9
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.1e-08 66.2 45 60.0
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.3e-08 63.9 64 48.4
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 3.4e-07 61.2 183 26.8


User provided reference genes

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