Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.4e-81 305.4 155 100.0
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 5.6e-30 134.8 138 52.9
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.6e-30 134.0 137 54.7
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.2e-27 127.1 140 48.6
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.5e-27 126.7 130 51.5
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.0e-26 124.0 134 48.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 8.4e-26 120.9 139 47.5
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 3.2e-25 119.0 126 46.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.2e-24 117.1 136 46.3
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 2.7e-24 115.9 135 47.4
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.5e-24 115.5 140 47.1
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.5e-24 115.5 126 49.2
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 6.0e-24 114.8 142 49.3
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 6.0e-24 114.8 134 45.5
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 6.0e-24 114.8 157 42.7
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.0e-23 114.0 142 49.3
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.0e-23 114.0 132 46.2
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.8e-23 113.2 137 43.1
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 2.3e-23 112.8 136 42.6
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 3.0e-23 112.5 138 45.7
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.1e-23 111.7 136 46.3
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.7e-23 111.3 140 45.7
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 6.7e-23 111.3 139 43.9
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 8.7e-23 110.9 135 44.4
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.1e-22 110.5 131 43.5
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-22 110.5 140 45.7
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.1e-22 110.5 136 44.1
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.1e-22 110.5 127 48.8
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.5e-22 110.2 135 43.0
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.9e-22 109.8 135 43.0
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.9e-22 109.8 135 43.0
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.3e-22 109.0 140 45.0
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 3.3e-22 109.0 140 41.4
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.4e-22 107.8 135 42.2
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 7.4e-22 107.8 140 45.0
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.3e-21 107.1 128 46.1
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.6e-21 106.7 134 47.8
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.6e-21 106.7 140 46.4
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 2.1e-21 106.3 140 43.6
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 6.2e-21 104.8 128 44.5
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 8.2e-21 104.4 132 45.5
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-20 104.0 136 44.1
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-20 104.0 136 43.4
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.4e-20 103.6 136 44.1
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.4e-20 102.8 145 42.8
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 2.4e-20 102.8 129 42.6
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 3.1e-20 102.4 144 38.9
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 3.1e-20 102.4 132 42.4
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 3.1e-20 102.4 127 45.7
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 3.1e-20 102.4 140 43.6
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 5.3e-20 101.7 142 43.0
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 5.3e-20 101.7 148 46.6
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 9.0e-20 100.9 135 43.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 9.0e-20 100.9 143 42.7
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.2e-19 100.5 137 39.4
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.2e-19 100.5 131 43.5
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 2.0e-19 99.8 125 46.4
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 3.4e-19 99.0 139 42.4
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 3.4e-19 99.0 137 38.7
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.0e-18 97.4 139 39.6
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.3e-18 97.1 98 53.1
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.3e-18 97.1 136 42.6
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.7e-18 96.7 124 42.7
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.7e-18 96.7 148 38.5
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.2e-18 96.3 132 44.7
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.2e-18 96.3 106 50.0
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 5.0e-18 95.1 135 41.5
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 5.0e-18 95.1 139 40.3
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.0e-18 95.1 135 42.2
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 5.0e-18 95.1 148 38.5
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.5e-18 94.7 137 39.4
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 8.4e-18 94.4 140 41.4
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 8.4e-18 94.4 137 40.1
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 8.4e-18 94.4 139 39.6
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.1e-17 94.0 134 41.0
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 4.2e-17 92.0 140 39.3
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 4.2e-17 92.0 151 40.4
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.2e-16 90.5 128 42.2
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.1e-16 89.7 136 41.9
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.1e-16 89.7 133 42.9
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 2.1e-16 89.7 137 39.4
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.7e-16 89.4 118 48.3
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 2.7e-16 89.4 134 39.6
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.5e-16 89.0 118 48.3
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 6.1e-16 88.2 133 40.6
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.8e-15 86.7 131 42.0
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 8.7e-15 84.3 128 39.8
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.7e-15 84.3 141 37.6
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.5e-14 83.6 126 39.7
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 2.5e-14 82.8 142 41.5
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 4.3e-14 82.0 133 39.8
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 4.3e-14 82.0 101 40.6
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 4.3e-14 82.0 140 38.6
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.3e-13 80.5 102 46.1
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.3e-13 80.5 109 43.1
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.3e-13 80.5 109 43.1
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.8e-13 79.3 123 37.4
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 4.8e-13 78.6 123 37.4
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 8.2e-13 77.8 117 41.9
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.1e-12 77.4 104 43.3
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.1e-12 77.4 142 38.0
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 2.4e-12 76.3 122 40.2
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.1e-12 75.9 119 38.7
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 5.3e-12 75.1 103 41.7
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 9.0e-12 74.3 103 40.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.2e-11 73.9 134 34.3
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.6e-11 72.8 113 40.7
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 3.4e-11 72.4 109 38.5
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 3.4e-11 72.4 103 40.8
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 5.9e-11 71.6 115 39.1
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.3e-10 70.5 103 39.8
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.3e-10 70.5 103 39.8
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.3e-10 70.5 111 41.4
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.7e-10 70.1 120 40.0
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 5.0e-10 68.6 103 39.8
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 5.0e-10 68.6 103 39.8
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 6.5e-10 68.2 130 30.0
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 6.5e-10 68.2 103 38.8
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 1.1e-09 67.4 134 36.6
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.1e-09 67.4 117 41.0
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.5e-09 66.2 112 38.4
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 2.5e-09 66.2 129 34.9
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 3.2e-09 65.9 139 36.7
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 4.2e-09 65.5 157 29.9
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 5.5e-09 65.1 158 32.9
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 5.5e-09 65.1 158 32.9
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 9.4e-09 64.3 132 32.6
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.2e-08 63.9 125 36.8
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.6e-08 63.5 99 37.4
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 6.1e-08 61.6 157 32.5
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 6.1e-08 61.6 131 35.9
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.0e-07 60.8 85 40.0
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 1.0e-07 60.8 139 36.0
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.4e-07 60.5 107 35.5
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.4e-07 60.5 105 35.2
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 2.3e-07 59.7 154 31.2
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 3.0e-07 59.3 158 30.4
unitig_21.g20302 Utricularia gibba HOM05D005728 ORTHO05D005733 5.1e-07 58.5 126 38.1
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 7.4e-06 54.7 139 31.7


User provided reference genes

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