Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.8e-118 428.7 231 100.0
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 4.5e-92 341.7 232 72.4
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.8e-91 338.6 231 79.2
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 9.4e-90 334.0 230 76.1
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.0e-88 328.9 230 76.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.2e-86 322.8 231 76.6
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.8e-86 322.4 237 75.9
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 4.1e-85 318.5 232 66.4
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 7.0e-85 317.8 233 74.7
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 9.1e-85 317.4 227 74.4
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.5e-84 315.5 231 74.0
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 5.9e-84 314.7 234 69.2
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 7.7e-84 314.3 261 62.5
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.3e-83 313.5 238 68.9
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 2.3e-83 312.8 231 72.7
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 6.5e-83 311.2 233 72.5
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.5e-82 310.1 233 67.0
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.5e-82 310.1 228 71.5
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.9e-82 309.7 231 69.3
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.5e-82 309.3 233 71.2
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 5.5e-82 308.1 233 70.4
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 9.5e-82 307.4 232 72.0
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.2e-81 307.0 233 70.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.6e-81 306.6 231 67.1
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.0e-80 303.9 225 68.0
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.5e-79 300.1 241 63.1
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 4.4e-79 298.5 231 64.5
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 9.8e-79 297.4 231 64.5
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 9.8e-79 297.4 232 63.4
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 9.8e-79 297.4 238 60.5
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.9e-78 295.0 220 65.0
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 6.3e-78 294.7 232 62.5
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 6.3e-78 294.7 222 64.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 6.3e-78 294.7 239 62.8
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.4e-77 293.5 223 69.5
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.8e-77 293.1 231 68.4
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 4.1e-77 292.0 232 69.0
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.6e-76 290.0 235 67.2
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.7e-76 289.3 226 69.9
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 5.9e-76 288.1 235 67.2
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 5.9e-76 288.1 223 65.5
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.0e-75 287.3 228 70.6
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.0e-75 287.3 231 66.2
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.7e-75 286.6 233 66.5
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.5e-74 283.5 225 67.1
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.9e-74 283.1 228 68.9
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.9e-74 283.1 224 64.7
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.5e-74 282.7 227 66.5
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.5e-74 282.7 224 68.3
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.5e-74 282.7 225 69.8
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.3e-74 282.0 224 63.4
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 4.3e-74 282.0 230 69.1
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.5e-74 280.8 231 64.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.2e-73 280.4 226 62.4
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.2e-73 280.4 226 69.0
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.2e-73 280.4 231 67.1
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.6e-73 280.0 232 67.2
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-73 280.0 232 64.2
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.8e-73 279.3 225 68.0
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 3.6e-73 278.9 223 67.7
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 4.7e-73 278.5 232 63.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 4.7e-73 278.5 228 68.4
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 4.7e-73 278.5 232 65.1
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 6.1e-73 278.1 217 66.4
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 6.1e-73 278.1 215 62.3
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 6.1e-73 278.1 237 66.2
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 8.0e-73 277.7 229 67.7
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.0e-72 277.3 230 60.0
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.0e-72 277.3 220 59.1
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.0e-72 277.3 233 67.4
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.4e-72 276.9 221 60.6
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.8e-72 276.6 232 65.1
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 3.0e-72 275.8 218 70.2
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.0e-72 275.8 235 66.0
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 3.0e-72 275.8 230 62.6
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.2e-72 275.0 226 68.1
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.8e-72 274.6 225 68.0
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 8.9e-72 274.2 224 61.2
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 8.9e-72 274.2 225 68.0
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.2e-71 273.9 217 65.4
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.2e-71 273.9 224 60.7
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.2e-71 273.9 223 59.2
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.5e-71 273.5 224 67.9
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.6e-71 272.7 219 67.6
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.6e-71 272.7 231 66.7
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.4e-71 272.3 224 60.7
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.4e-71 272.3 223 59.2
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 5.8e-71 271.6 224 59.8
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.8e-71 270.8 226 68.1
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 9.8e-71 270.8 230 67.4
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-70 270.0 221 62.0
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.7e-70 270.0 221 62.0
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.2e-70 269.6 224 61.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.2e-70 269.6 241 65.1
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.9e-70 269.2 226 65.5
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 3.7e-70 268.9 223 58.7
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 3.7e-70 268.9 220 70.0
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 4.9e-70 268.5 224 67.0
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 8.3e-70 267.7 174 71.3
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 8.3e-70 267.7 236 65.3
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.4e-69 266.9 271 53.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 3.2e-69 265.8 250 53.6
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 4.1e-69 265.4 221 62.4
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 9.2e-69 264.2 223 58.3
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.2e-68 263.8 228 56.6
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.2e-68 263.8 245 59.6
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.6e-68 263.5 226 64.2
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.6e-68 263.5 238 60.9
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.6e-68 261.9 211 66.8
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 5.0e-67 258.5 227 56.4
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.0e-67 258.5 227 56.4
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.0e-67 258.5 227 56.4
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.0e-67 258.5 215 63.3
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.5e-66 256.9 205 64.4
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.3e-66 255.8 270 56.3
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.3e-66 255.4 217 58.5
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.3e-66 255.4 227 58.1
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 4.7e-65 251.9 266 54.9
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.1e-64 250.8 218 62.8
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.0e-64 248.8 227 57.3
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.0e-63 246.5 169 66.9
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 9.8e-63 244.2 223 54.7
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.2e-62 243.0 143 80.4
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 8.3e-62 241.1 171 67.3
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.4e-61 240.4 173 64.7
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 5.4e-61 238.4 249 53.4
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 2.1e-60 236.5 225 55.6
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.0e-59 234.2 223 53.8
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 3.0e-59 232.6 146 75.3
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 8.6e-59 231.1 192 68.2
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 7.3e-58 228.0 141 78.0
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 2.8e-57 226.1 249 48.6
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.4e-56 223.8 184 65.2
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.8e-56 223.4 254 48.8
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.2e-55 220.7 242 50.4
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.0e-55 219.9 143 69.9
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.4e-55 219.2 244 50.8
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.4e-55 218.8 280 47.5
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.7e-54 216.9 147 67.3
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.1e-53 212.2 133 75.2
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.6e-51 204.5 141 70.2
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.8e-49 199.5 130 74.6
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 6.4e-46 188.3 148 57.4
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 3.5e-44 182.6 127 68.5
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 3.0e-43 179.5 131 62.6
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 3.3e-42 176.0 153 54.2
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.7e-35 151.4 233 42.9
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 8.7e-35 151.4 98 69.4
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.1e-33 146.7 147 56.5
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.4e-29 134.0 99 61.6
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.9e-27 125.9 98 67.3
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 6.2e-25 118.6 114 53.5
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.4e-21 107.5 187 36.9
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.2e-20 104.4 101 68.3
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 7.9e-20 101.7 224 29.5
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 6.7e-19 98.6 123 39.0
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 4.0e-16 89.4 145 32.4
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 6.9e-16 88.6 77 51.9
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.0e-15 87.0 114 38.6
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.2e-14 83.6 89 65.2
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 3.2e-13 79.7 117 35.9
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.2e-12 77.8 77 48.1
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.6e-12 77.4 95 57.9
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.3e-11 74.3 90 61.1
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 6.7e-11 72.0 92 55.4
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 2.2e-09 67.0 75 44.0
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 9.0e-08 61.6 56 48.2


User provided reference genes

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