Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018656 Daucus carota HOM05D002277 ORTHO05D001770 4.9e-72 274.6 166 100.0
DCAR_015348 Daucus carota HOM05D002277 ORTHO05D001770 3.6e-43 178.7 192 58.3
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 7.4e-20 101.3 146 46.6
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.8e-18 96.7 162 40.7
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 5.3e-18 95.1 108 52.8
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.0e-17 93.2 113 45.1
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 2.6e-17 92.8 108 52.8
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 7.7e-17 91.3 169 37.3
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 1.7e-16 90.1 115 43.5
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.2e-16 89.7 169 37.9
Psat7g229920 Pisum sativum HOM05D002277 ORTHO05D001770 2.9e-16 89.4 136 40.4
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 8.5e-16 87.8 108 50.9
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 8.5e-16 87.8 116 45.7
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.1e-15 87.4 97 50.5
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.5e-15 86.3 172 37.8
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.5e-15 86.3 172 40.1
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 5.5e-15 85.1 166 43.4
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 7.2e-15 84.7 181 39.2
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 7.2e-15 84.7 166 42.2
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 7.2e-15 84.7 174 37.9
DCAR_028908 Daucus carota HOM05D002277 ORTHO05D001770 1.6e-14 83.6 169 42.6
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.6e-14 83.6 96 46.9
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 1.6e-14 83.6 166 34.9
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 2.1e-14 83.2 162 35.8
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 6.1e-14 81.6 110 43.6
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 7.9e-14 81.3 96 49.0
Ca_24067_v3 Cicer arietinum L. HOM05D002277 ORTHO05D001770 1.0e-13 80.9 139 42.4
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.0e-13 80.9 127 39.4
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 2.3e-13 79.7 169 41.4
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 3.0e-13 79.3 96 46.9
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 3.0e-13 79.3 96 46.9
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 3.0e-13 79.3 96 46.9
Oeu003236.1 Olea europaea HOM05D002277 ORTHO05D001770 3.9e-13 79.0 165 39.4
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.9e-13 79.0 103 48.5
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 6.7e-13 78.2 112 45.5
Lalb_Chr19g0124091 Lupinus albus HOM05D002277 ORTHO05D001770 6.7e-13 78.2 147 37.4
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 8.8e-13 77.8 102 48.0
Glyma.18G211300 Glycine max HOM05D002277 ORTHO05D001770 8.8e-13 77.8 141 40.4
Phvul.010G067300 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 8.8e-13 77.8 93 47.3
Glyma.09G277500 Glycine max HOM05D002277 ORTHO05D001770 1.1e-12 77.4 142 39.4
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 1.1e-12 77.4 116 43.1
VMungo0331G0789 Vigna mungo HOM05D002277 ORTHO05D001770 1.1e-12 77.4 95 50.5
Oeu064877.1 Olea europaea HOM05D002277 ORTHO05D001770 1.5e-12 77.0 105 41.9
Phvul.008G086700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 2.0e-12 76.6 141 40.4
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 2.5e-12 76.3 98 48.0
CiPaw.10G163800 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.5e-12 76.3 168 45.8
Medtr4g029130 Medicago truncatula HOM05D002277 ORTHO05D001770 2.5e-12 76.3 93 45.2
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 2.5e-12 76.3 177 35.0
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 2.5e-12 76.3 112 44.6
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 3.3e-12 75.9 112 45.5
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.3e-12 75.9 96 46.9
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.3e-12 75.9 111 45.9
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 4.3e-12 75.5 110 41.8
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 4.3e-12 75.5 168 32.7
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 4.3e-12 75.5 113 39.8
Lalb_Chr07g0190701 Lupinus albus HOM05D002277 ORTHO05D001770 4.3e-12 75.5 93 48.4
Psat3g121440 Pisum sativum HOM05D002277 ORTHO05D001770 4.3e-12 75.5 169 42.6
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 4.3e-12 75.5 106 40.6
Ciclev10012858m.g Citrus clementina HOM05D002277 ORTHO05D001770 5.7e-12 75.1 114 41.2
Glyma.01G131200 Glycine max HOM05D002277 ORTHO05D001770 7.4e-12 74.7 141 45.4
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 7.4e-12 74.7 93 49.5
Medtr5g083970 Medicago truncatula HOM05D002277 ORTHO05D001770 7.4e-12 74.7 101 56.4
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 9.7e-12 74.3 101 45.5
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 9.7e-12 74.3 111 45.0
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.3e-11 73.9 101 44.6
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.3e-11 73.9 101 44.6
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.3e-11 73.9 101 44.6
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.7e-11 73.6 93 48.4
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.7e-11 73.6 96 44.8
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 2.2e-11 73.2 105 41.0
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 2.2e-11 73.2 113 38.1
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.2e-11 73.2 94 47.9
Lj1g0022794 Lotus japonicus HOM05D002277 ORTHO05D001770 2.8e-11 72.8 106 40.6
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 3.7e-11 72.4 97 48.5
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 3.7e-11 72.4 112 41.1
Phvul.005G105700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 3.7e-11 72.4 59 64.4
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 3.7e-11 72.4 101 41.6
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 3.7e-11 72.4 140 36.4
Lj3g0001226 Lotus japonicus HOM05D002277 ORTHO05D001770 6.3e-11 71.6 134 35.1
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 8.2e-11 71.2 89 48.3
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 1.1e-10 70.9 114 43.9
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.1e-10 70.9 113 38.9
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 1.4e-10 70.5 116 38.8
Ca_19777_v3 Cicer arietinum L. HOM05D002277 ORTHO05D001770 1.8e-10 70.1 59 62.7
Glyma.03G037600 Glycine max HOM05D002277 ORTHO05D001770 1.8e-10 70.1 58 60.3
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 1.8e-10 70.1 113 38.1
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.8e-10 70.1 175 30.9
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.4e-10 69.7 174 31.6
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 3.1e-10 69.3 110 39.1
Medtr7g072540 Medicago truncatula HOM05D002277 ORTHO05D001770 3.1e-10 69.3 88 46.6
TWI73G0449 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 3.1e-10 69.3 111 41.4
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 4.1e-10 68.9 87 49.4
MBI15_g33145_MAGBIO Magnolia biondii HOM05D002277 ORTHO05D001770 4.1e-10 68.9 101 46.5
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 4.1e-10 68.9 101 40.6
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 5.3e-10 68.6 94 42.6
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 5.3e-10 68.6 115 39.1
TPR.G4419 Trifolium pratense HOM05D002277 ORTHO05D001770 5.3e-10 68.6 88 46.6
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 6.9e-10 68.2 92 43.5
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 9.1e-10 67.8 97 41.2
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 9.1e-10 67.8 175 30.9
Peaxi162Scf00167g00134 Petunia axillaris HOM05D002277 ORTHO05D001770 1.2e-09 67.4 110 37.3
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.2e-09 67.4 98 39.8
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 1.2e-09 67.4 94 40.4
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 1.5e-09 67.0 66 57.6
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 1.5e-09 67.0 113 38.9
arahy.Tifrunner.gnm1.ann1.H4MVMY Arachis hypogaea HOM05D002277 ORTHO05D001770 2.0e-09 66.6 69 55.1
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 2.0e-09 66.6 113 38.9
Peaxi162Scf01078g00031 Petunia axillaris HOM05D002277 ORTHO05D001770 2.6e-09 66.2 106 41.5
TWI77G0059 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 2.6e-09 66.2 164 34.8
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.4e-09 65.9 92 42.4
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.4e-09 65.9 92 43.5
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 4.5e-09 65.5 110 40.0
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 4.5e-09 65.5 94 44.7
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 4.5e-09 65.5 166 35.5
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 4.5e-09 65.5 93 43.0
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 4.5e-09 65.5 116 37.1
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 5.9e-09 65.1 114 43.0
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 7.7e-09 64.7 97 44.3
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 7.7e-09 64.7 94 44.7
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 1.7e-08 63.5 92 35.9
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.7e-08 63.5 105 36.2
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 2.2e-08 63.2 128 33.6
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 2.2e-08 63.2 112 42.9
Ah.08g209750 Amaranthus hybridus HOM05D002277 ORTHO05D001770 2.9e-08 62.8 181 29.8
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 2.9e-08 62.8 112 40.2
PGR031G1525 Punica granatum HOM05D002277 ORTHO05D001770 2.9e-08 62.8 111 39.6
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 3.8e-08 62.4 110 35.5
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 3.8e-08 62.4 107 39.3
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 3.8e-08 62.4 89 43.8
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 3.8e-08 62.4 109 36.7
Potri.013G156100 Populus trichocarpa HOM05D002277 ORTHO05D001770 3.8e-08 62.4 114 42.1
Hma1.2p1_2270F.1_g318540 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 5.0e-08 62.0 119 41.2
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 6.5e-08 61.6 112 44.6
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 8.5e-08 61.2 70 45.7
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 8.5e-08 61.2 106 39.6
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.5e-08 61.2 89 42.7
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 8.5e-08 61.2 110 41.8
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 1.1e-07 60.8 116 37.1
Nitab4.5_0007794g0020 Nicotiana tabacum HOM05D002277 ORTHO05D001770 1.1e-07 60.8 109 51.4
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 1.1e-07 60.8 112 43.8
EL10Ac7g17051 Beta vulgaris HOM05D002277 ORTHO05D001770 1.4e-07 60.5 105 37.1
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.4e-07 60.5 99 39.4
Cpa.g.sc2.326 Carica papaya HOM05D002277 ORTHO05D001770 1.9e-07 60.1 120 37.5
Os01g0166500 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 2.5e-07 59.7 110 50.9
Potri.019G127400 Populus trichocarpa HOM05D002277 ORTHO05D001770 3.2e-07 59.3 114 39.5
TAR287G0001 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.2e-06 57.4 68 44.1
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 1.2e-06 57.4 104 34.6
Thhalv10017268m.g Eutrema salsugineum HOM05D002277 ORTHO05D001770 1.6e-06 57.0 153 44.4
Sabra19G0125500 Salix brachista HOM05D002277 ORTHO05D001770 2.1e-06 56.6 94 38.3
Sabra19G0129800 Salix brachista HOM05D002277 ORTHO05D001770 2.1e-06 56.6 94 38.3
Actinidia11526 Actinidia chinensis HOM05D002277 ORTHO05D001770 4.7e-06 55.5 47 55.3
Actinidia34486 Actinidia chinensis HOM05D002277 ORTHO05D001770 4.7e-06 55.5 162 29.0
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.7e-06 55.5 114 38.6
Gohir.D03G144700 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.7e-06 55.5 91 36.3
TWI09G0487 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 4.7e-06 55.5 119 34.5
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 6.1e-06 55.1 99 42.4
Gohir.A03G023900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 6.1e-06 55.1 91 36.3
HPP92_013855 Vanilla planifolia HOM05D002277 ORTHO05D001770 6.1e-06 55.1 58 50.0
CARHR135590 Cardamine hirsuta HOM05D002277 ORTHO05D001770 7.9e-06 54.7 73 61.6
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 7.9e-06 54.7 62 53.2


User provided reference genes

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