Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.6e-121 439.5 226 100.0
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.8e-70 269.2 227 65.2
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.8e-64 250.0 204 65.2
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 5.6e-63 245.0 228 58.3
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.3e-62 243.8 228 59.2
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.1e-62 243.0 228 58.3
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.7e-62 242.3 228 60.5
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 3.1e-61 239.2 211 60.2
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 6.9e-61 238.0 228 57.5
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 2.0e-60 236.5 228 57.9
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 2.0e-60 236.5 228 58.8
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.0e-60 236.5 227 59.9
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 2.6e-60 236.1 191 66.0
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.6e-60 236.1 228 57.0
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 3.4e-60 235.7 229 59.0
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 5.8e-60 235.0 228 58.8
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.0e-59 234.2 228 57.5
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.8e-59 232.3 228 57.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 6.5e-59 231.5 199 62.3
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 8.4e-59 231.1 228 57.0
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.4e-58 230.3 228 54.8
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.4e-58 230.3 204 59.3
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 3.2e-58 229.2 228 54.8
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 3.2e-58 229.2 210 59.5
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 5.5e-58 228.4 228 57.0
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 7.1e-58 228.0 210 59.5
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 9.3e-58 227.6 215 58.6
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.6e-57 226.9 197 62.4
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.1e-57 226.5 231 54.5
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.5e-57 225.7 218 57.3
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 4.6e-57 225.3 196 64.3
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 7.9e-57 224.6 192 62.5
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.3e-56 223.8 210 58.6
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.9e-56 222.2 224 54.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 3.9e-56 222.2 231 55.0
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 5.1e-56 221.9 230 55.7
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.7e-56 221.5 196 59.2
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.7e-56 221.5 196 59.2
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 8.7e-56 221.1 229 55.0
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 8.7e-56 221.1 207 60.4
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.7e-56 221.1 196 59.7
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.5e-55 220.3 227 55.1
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.9e-55 219.9 227 55.1
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 2.5e-55 219.5 225 56.0
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.3e-55 218.8 229 54.1
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.7e-55 218.4 224 53.6
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 7.4e-55 218.0 236 52.5
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.4e-55 218.0 224 53.6
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.4e-55 218.0 198 60.6
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 9.6e-55 217.6 229 54.6
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.6e-54 216.9 228 55.7
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-54 216.9 229 54.1
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.1e-54 216.5 205 57.6
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.1e-54 216.5 205 57.6
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.8e-54 216.1 220 57.7
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 3.7e-54 215.7 215 55.8
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 3.7e-54 215.7 227 55.1
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 6.3e-54 214.9 196 58.2
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 8.2e-54 214.5 220 54.5
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.2e-54 214.5 204 56.4
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.4e-53 213.8 206 58.3
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-53 213.0 198 59.1
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 6.9e-53 211.5 228 55.7
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 3.8e-51 205.7 196 58.7
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 5.0e-51 205.3 196 58.7
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.1e-50 204.1 182 59.9
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 4.2e-50 202.2 197 57.9
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.5e-50 201.8 228 52.2
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 7.2e-50 201.4 226 51.3
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.6e-49 200.3 232 53.0
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 2.1e-49 199.9 229 52.4
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 4.6e-49 198.7 266 45.9
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 4.6e-49 198.7 216 50.9
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 6.1e-49 198.4 181 61.3
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.1e-49 198.4 217 51.2
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.0e-48 197.6 278 46.0
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.0e-48 197.6 229 53.7
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.3e-48 197.2 207 53.6
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.3e-48 197.2 223 51.6
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.8e-48 196.8 230 52.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.8e-48 196.8 231 53.2
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 2.3e-48 196.4 216 52.8
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 8.7e-48 194.5 205 56.6
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.1e-47 194.1 228 52.2
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 4.3e-47 192.2 229 52.0
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 4.3e-47 192.2 200 56.5
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 5.7e-47 191.8 228 52.2
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 7.4e-47 191.4 228 50.9
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.3e-46 190.7 229 51.1
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.3e-46 190.7 204 54.4
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.6e-46 190.3 191 59.2
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.6e-46 190.3 225 51.1
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.8e-46 189.5 229 52.0
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.3e-46 188.3 176 60.2
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 8.2e-46 188.0 207 52.7
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.4e-45 187.2 228 50.9
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 5.3e-45 185.3 203 54.7
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.4e-44 182.6 203 54.2
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 7.7e-44 181.4 195 51.3
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 1.0e-43 181.0 214 50.9
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.0e-43 181.0 231 49.4
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.7e-43 180.3 299 40.8
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 6.5e-43 178.3 228 48.7
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 6.5e-43 178.3 195 54.4
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 8.5e-43 177.9 195 51.3
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.1e-42 177.6 198 50.5
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.4e-42 177.2 134 67.9
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.5e-42 176.4 184 51.1
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.2e-42 176.0 192 52.1
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 3.2e-42 176.0 196 54.6
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 5.5e-42 175.3 200 49.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.6e-41 173.7 216 50.0
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.1e-41 173.3 220 49.5
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.7e-41 172.9 235 45.5
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 4.6e-41 172.2 195 52.8
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 6.1e-41 171.8 207 49.8
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 6.1e-41 171.8 201 52.2
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.4e-40 170.6 196 50.5
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.8e-40 170.2 194 51.0
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-40 170.2 196 52.6
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.3e-40 169.9 269 41.6
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 3.0e-40 169.5 207 50.2
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 5.1e-40 168.7 139 64.7
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 6.7e-40 168.3 207 49.8
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 6.7e-40 168.3 207 49.8
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 2.0e-39 166.8 204 51.0
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 2.5e-39 166.4 104 75.0
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 4.3e-39 165.6 206 50.5
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 4.3e-39 165.6 219 47.5
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 4.3e-39 165.6 225 46.2
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 5.7e-39 165.2 234 47.0
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.7e-38 163.7 202 50.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.2e-38 163.3 206 50.0
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.7e-38 162.5 187 51.3
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.4e-37 160.6 196 48.5
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.1e-37 159.1 207 48.8
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.3e-37 158.7 210 48.6
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.5e-36 157.1 197 50.8
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.5e-36 157.1 210 44.8
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.5e-36 157.1 162 53.7
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 2.0e-36 156.8 204 46.6
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 5.9e-36 155.2 210 46.2
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 8.5e-35 151.4 102 72.5
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 8.5e-35 151.4 196 47.4
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 5.5e-34 148.7 128 59.4
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 5.5e-34 148.7 152 53.3
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 7.2e-34 148.3 195 46.7
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.2e-33 147.5 94 72.3
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.6e-33 147.1 112 58.9
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.0e-32 142.9 215 43.7
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.4e-31 139.0 116 62.9
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.2e-28 131.0 84 75.0
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.2e-28 131.0 84 75.0
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.2e-28 131.0 159 54.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.7e-27 127.1 196 42.9
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 2.9e-27 126.3 118 59.3
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.1e-26 124.4 79 73.4
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.0e-24 117.9 116 54.3
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 8.8e-24 114.8 169 45.6
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.2e-20 104.4 110 51.8
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.4e-16 90.9 111 44.1
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.6e-12 77.4 223 30.9
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 4.5e-12 75.9 55 65.5
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 4.2e-10 69.3 94 42.6
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 4.0e-08 62.8 125 33.6
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 2.6e-07 60.1 41 63.4
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 4.4e-07 59.3 40 65.0


User provided reference genes

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