Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 0.0e+00 1196.0 613 100.0
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 5.4e-302 1040.4 621 85.8
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 6.4e-287 990.3 610 82.5
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.3e-283 978.0 618 80.6
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 5.8e-280 967.2 618 79.6
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.7e-279 965.7 618 80.4
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 2.2e-279 965.3 618 79.8
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 8.4e-279 963.4 617 79.6
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 4.6e-277 957.6 618 78.6
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 6.0e-277 957.2 617 79.3
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.0e-276 956.4 618 78.5
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.8e-276 955.7 618 78.6
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 3.9e-276 954.5 618 78.8
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 8.7e-276 953.4 617 78.8
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 8.7e-276 953.4 642 76.6
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.1e-275 953.0 619 78.8
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 9.6e-275 949.9 618 78.6
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.7e-274 948.0 618 77.8
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 8.2e-274 946.8 618 78.3
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.4e-273 945.3 619 78.5
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.6e-272 941.8 618 78.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 3.4e-272 941.4 618 77.8
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 3.4e-272 941.4 618 77.7
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 2.2e-271 938.7 618 77.7
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 2.2e-271 938.7 618 77.5
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 6.5e-271 937.2 615 78.0
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 8.4e-271 936.8 615 77.4
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.0e-268 928.3 619 77.7
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.1e-267 926.4 618 76.4
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.5e-267 926.0 619 77.1
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 9.7e-267 923.3 628 75.0
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.3e-266 922.9 657 74.4
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.6e-266 922.5 625 75.5
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.6e-266 922.5 615 76.7
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 2.8e-266 921.8 618 76.2
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.1e-265 919.8 618 75.7
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.4e-265 919.5 619 76.3
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 2.4e-265 918.7 618 76.7
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 6.9e-265 917.1 618 76.1
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 7.7e-264 913.7 618 75.6
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.0e-263 913.3 618 76.5
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.7e-263 912.5 618 75.7
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 2.9e-263 911.8 618 75.4
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 6.1e-261 904.0 681 70.0
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.0e-260 903.3 753 65.6
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 5.1e-260 901.0 615 75.1
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 8.8e-260 900.2 620 74.4
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.8e-258 895.2 618 75.1
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 4.8e-258 894.4 616 74.4
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 4.8e-258 894.4 616 74.4
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.4e-257 892.9 624 74.0
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.0e-256 889.0 613 73.4
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 5.9e-256 887.5 613 73.1
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.1e-254 883.2 611 73.6
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.2e-253 879.8 617 72.9
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.6e-253 879.4 618 73.1
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 2.1e-253 879.0 617 72.6
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.7e-253 878.6 617 72.4
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 3.6e-253 878.2 617 72.8
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 3.6e-253 878.2 618 73.0
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 6.1e-253 877.5 617 72.3
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.4e-252 876.3 645 70.9
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 5.1e-252 874.4 610 73.0
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 8.8e-252 873.6 628 70.9
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.5e-251 872.8 621 72.1
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 5.7e-251 870.9 617 72.3
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.3e-250 869.8 615 72.7
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.2e-250 869.0 615 72.7
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.8e-250 867.8 615 72.8
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 6.3e-250 867.5 617 71.8
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 7.0e-249 864.0 615 70.1
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.2e-247 859.0 614 72.3
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.9e-247 858.6 650 68.8
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.2e-246 855.1 611 72.2
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 4.7e-245 851.3 575 76.3
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 8.0e-245 850.5 614 71.7
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 8.0e-245 850.5 617 70.5
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.8e-244 849.4 613 71.8
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.9e-244 848.2 543 79.7
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.0e-237 823.9 633 69.0
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 4.0e-236 821.6 600 70.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.5e-235 819.7 583 72.6
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.4e-233 813.1 618 69.4
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 9.1e-233 810.4 615 67.0
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.6e-232 809.7 639 66.8
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.5e-232 808.5 602 69.9
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 1.9e-230 802.7 611 67.8
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 6.8e-228 794.3 620 68.2
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 2.4e-225 785.8 583 71.0
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 7.0e-225 784.3 517 77.0
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.3e-223 779.2 517 76.0
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 5.5e-222 774.6 616 64.1
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 1.3e-218 763.5 514 76.3
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.0e-207 727.2 615 59.0
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.1e-201 707.2 531 71.6
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 6.6e-199 698.0 620 57.7
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 8.6e-199 697.6 466 75.8
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 3.1e-196 689.1 447 78.5
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 4.1e-193 678.7 615 57.4
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.4e-187 658.7 558 64.0
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.3e-178 630.6 649 51.0
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 5.5e-161 572.0 362 82.3
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.2e-152 544.3 338 82.5
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.5e-150 536.6 617 47.6
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 8.2e-149 531.6 490 60.8
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 2.5e-145 520.0 360 75.6
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.4e-143 514.2 617 45.1
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 5.9e-139 498.8 389 68.9
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 8.2e-133 478.4 364 66.2
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 2.2e-125 453.8 510 46.7
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 7.5e-118 428.7 594 44.3
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.0e-103 380.2 282 73.8
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 7.8e-99 365.5 369 58.3
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-93 348.2 454 48.7
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 5.2e-71 273.1 175 78.3
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.0e-66 258.8 171 76.6
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.6e-66 256.1 188 64.4
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.7e-58 229.2 150 78.0
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.0e-54 218.0 144 77.1
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.4e-53 212.6 134 78.4
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.9e-44 184.9 119 75.6
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 7.9e-43 179.5 122 71.3
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.5e-41 175.3 150 60.7
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 5.3e-39 166.8 105 74.3
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.3e-37 162.2 132 62.9
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 6.5e-37 159.8 105 79.0
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 1.2e-35 155.6 106 70.8
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.1e-35 154.8 178 48.9
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 9.1e-31 139.4 94 73.4
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 5.1e-26 123.6 105 53.3
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 3.7e-24 117.5 150 50.7
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.8e-24 117.1 74 78.4
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.0e-22 111.7 86 68.6
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.2e-19 102.4 115 55.7
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 8.8e-18 96.3 76 64.5
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.8e-16 91.3 59 67.8
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.8e-16 91.3 59 67.8
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.8e-15 88.6 58 70.7
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.1e-15 87.4 56 69.6
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 7.0e-15 86.7 59 69.5
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 7.0e-15 86.7 59 69.5
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 6.1e-11 73.6 54 59.3
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.8e-10 72.0 42 73.8
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 3.0e-10 71.2 80 47.5
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 6.7e-10 70.1 56 57.1
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 9.7e-09 66.2 56 50.0
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.3e-08 65.9 48 70.8
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 3.7e-08 64.3 53 67.9
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.4e-07 61.6 38 73.7
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 3.1e-07 61.2 34 88.2
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.3e-07 60.5 33 90.9
Hma1.2p1_0484F.1_g162800 Hydrangea macrophylla HOM05D004954 ORTHO05D008776 4.5e-06 57.4 33 84.8


User provided reference genes

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