Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 1.2e-118 429.9 214 100.0
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 6.1e-67 258.1 161 78.3
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 6.1e-67 258.1 217 67.7
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 3.0e-66 255.8 194 68.0
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 3.0e-66 255.8 196 68.4
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.1e-65 253.8 200 69.0
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 2.6e-65 252.7 162 77.8
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 3.3e-65 252.3 196 69.4
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 3.3e-65 252.3 166 76.5
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 3.3e-65 252.3 196 67.9
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 7.5e-65 251.1 221 63.8
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 1.7e-64 250.0 160 76.9
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 1.7e-64 250.0 162 75.3
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 2.2e-64 249.6 195 67.7
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 4.8e-64 248.4 204 65.2
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.3e-64 248.1 159 77.4
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.8e-63 246.5 162 75.9
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 3.5e-62 242.3 192 68.8
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.3e-61 240.4 160 73.8
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.7e-61 240.0 171 73.1
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 2.2e-61 239.6 164 73.2
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 2.2e-61 239.6 164 73.2
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 2.9e-61 239.2 203 63.5
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 2.9e-61 239.2 163 73.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 3.8e-61 238.8 163 73.0
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 5.0e-61 238.4 171 71.3
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 6.5e-61 238.0 163 74.2
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 8.5e-61 237.7 169 71.0
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 8.5e-61 237.7 218 62.8
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 1.1e-60 237.3 153 76.5
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.9e-60 236.5 185 67.6
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 1.9e-60 236.5 147 78.2
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.5e-60 236.1 162 74.1
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 7.2e-60 234.6 169 72.2
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 7.2e-60 234.6 149 77.2
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 7.2e-60 234.6 149 77.2
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 9.4e-60 234.2 177 70.6
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 9.4e-60 234.2 163 71.2
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 9.4e-60 234.2 158 73.4
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 1.2e-59 233.8 180 69.4
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.6e-59 233.4 180 68.3
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 2.1e-59 233.0 193 66.8
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 3.6e-59 232.3 177 70.1
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 3.6e-59 232.3 177 70.1
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 4.7e-59 231.9 150 74.7
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 4.7e-59 231.9 160 71.9
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.7e-59 231.9 160 71.9
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.7e-59 231.9 160 71.9
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 4.7e-59 231.9 164 70.7
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 6.1e-59 231.5 199 63.3
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 8.0e-59 231.1 199 63.8
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 8.0e-59 231.1 200 63.5
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 1.4e-58 230.3 210 62.9
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.4e-58 230.3 148 73.6
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 2.3e-58 229.6 192 66.7
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 3.0e-58 229.2 183 66.1
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 3.0e-58 229.2 142 78.9
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 3.0e-58 229.2 192 64.6
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 4.0e-58 228.8 166 66.9
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 5.2e-58 228.4 159 71.1
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 6.8e-58 228.0 156 71.8
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 8.8e-58 227.6 143 78.3
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 1.2e-57 227.3 140 77.9
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 1.2e-57 227.3 151 74.8
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 1.2e-57 227.3 163 70.6
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.6e-57 226.1 214 59.3
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 9.8e-57 224.2 163 68.7
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.3e-56 223.8 180 64.4
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 1.7e-56 223.4 215 59.5
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.2e-56 223.0 135 77.8
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 3.7e-56 222.2 166 69.9
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 4.8e-56 221.9 184 63.0
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 4.8e-56 221.9 148 73.0
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 6.3e-56 221.5 149 73.2
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 6.3e-56 221.5 205 60.0
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 1.1e-55 220.7 205 58.5
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 1.1e-55 220.7 133 79.7
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.4e-55 220.3 185 64.9
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 1.8e-55 219.9 188 63.3
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 1.8e-55 219.9 149 72.5
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.8e-55 219.9 154 70.8
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 1.8e-55 219.9 178 65.2
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 3.1e-55 219.2 166 66.9
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 3.1e-55 219.2 209 58.4
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 4.1e-55 218.8 134 76.9
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 9.1e-55 217.6 217 58.5
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 1.2e-54 217.2 132 78.8
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 1.2e-54 217.2 159 67.9
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 1.2e-54 217.2 165 67.3
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.6e-54 216.9 162 68.5
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 2.0e-54 216.5 180 62.2
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 2.0e-54 216.5 180 62.2
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 2.7e-54 216.1 127 81.1
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 4.5e-54 215.3 196 60.2
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 5.9e-54 214.9 182 64.8
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 5.9e-54 214.9 182 64.8
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 5.9e-54 214.9 182 64.8
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 5.9e-54 214.9 151 71.5
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 1.3e-53 213.8 185 63.8
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.3e-53 213.8 166 63.9
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.7e-53 213.4 195 59.5
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 1.7e-53 213.4 188 61.7
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.7e-53 213.4 151 71.5
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 2.2e-53 213.0 125 80.0
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 2.9e-53 212.6 125 79.2
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 2.9e-53 212.6 125 79.2
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 8.5e-53 211.1 163 65.0
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 8.5e-53 211.1 197 61.9
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 4.2e-52 208.8 200 55.5
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.4e-50 203.8 123 78.9
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.8e-50 203.4 178 63.5
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 8.3e-48 194.5 130 71.5
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 6.6e-45 184.9 129 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 4.3e-44 182.2 128 67.2
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 7.3e-44 181.4 147 57.8
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.8e-43 179.5 140 67.1
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 6.1e-43 178.3 181 53.6
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.3e-42 176.4 142 57.7
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.3e-42 176.4 142 57.7
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.2e-41 174.1 134 61.2
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 4.7e-35 152.1 97 79.4
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 1.9e-31 140.2 101 71.3
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 3.3e-28 129.4 117 59.8
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 4.3e-28 129.0 80 77.5
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 2.1e-27 126.7 76 80.3
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 4.0e-26 122.5 137 47.4
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 5.1e-21 105.5 124 45.2
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.2e-19 100.9 138 40.6
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.4e-18 97.4 62 71.0
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 4.0e-18 95.9 64 68.8
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 5.2e-18 95.5 84 59.5
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.1e-15 87.8 103 47.6
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.2e-14 84.3 63 69.8
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.2e-14 84.3 49 77.6
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 2.3e-13 80.1 56 66.1
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.1e-10 71.2 54 68.5
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 1.2e-09 67.8 33 90.9
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.0e-09 67.0 46 63.0
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 2.4e-07 60.1 74 47.3
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 9.3e-07 58.2 61 52.5


User provided reference genes

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