Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 0.0e+00 1080.5 513 100.0
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 2.3e-237 825.5 491 76.2
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 7.4e-236 820.5 492 76.6
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 1.4e-234 816.2 491 76.2
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 3.1e-234 815.1 491 76.6
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.0e-233 812.4 491 76.0
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 5.8e-233 810.8 495 74.5
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 5.0e-232 807.7 491 74.9
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 6.5e-232 807.4 490 76.1
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.1e-231 806.6 491 74.9
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 1.4e-231 806.2 492 74.0
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 4.2e-231 804.7 491 74.7
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 4.6e-230 801.2 490 74.3
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 7.9e-230 800.4 491 74.3
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 2.3e-229 798.9 492 73.6
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 2.3e-229 798.9 490 74.1
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 3.0e-229 798.5 484 74.6
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 3.0e-229 798.5 491 73.9
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 3.0e-229 798.5 491 75.2
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 5.1e-229 797.7 491 74.5
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 6.7e-229 797.3 493 73.4
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 8.7e-229 797.0 491 74.3
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 4.3e-228 794.7 493 74.0
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.6e-227 792.7 491 73.7
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.6e-227 792.7 504 72.8
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 1.6e-227 792.7 491 73.7
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.6e-227 792.7 492 73.4
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 3.7e-227 791.6 491 74.1
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 3.7e-227 791.6 493 74.6
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 6.3e-227 790.8 491 73.9
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 8.2e-227 790.4 491 73.3
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 1.1e-226 790.0 491 73.5
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 1.4e-226 789.6 491 73.7
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 1.8e-226 789.3 491 73.5
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 3.1e-226 788.5 491 73.5
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 4.1e-226 788.1 493 74.0
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.2e-225 786.6 491 73.5
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 1.2e-225 786.6 491 73.3
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.5e-225 786.2 491 73.3
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.5e-225 786.2 491 73.7
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 2.0e-225 785.8 491 72.7
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.6e-225 785.4 491 72.7
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 4.5e-225 784.6 491 72.9
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 7.7e-225 783.9 491 73.1
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 7.7e-225 783.9 491 73.1
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.0e-224 783.5 491 72.7
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.0e-224 783.5 492 74.2
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 1.3e-224 783.1 491 74.3
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 2.9e-224 781.9 491 72.9
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.9e-224 781.9 506 70.9
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 2.9e-224 781.9 491 73.1
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 5.0e-224 781.2 491 74.1
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 5.0e-224 781.2 490 72.2
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 3.2e-223 778.5 491 72.3
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 5.5e-223 777.7 519 69.7
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.2e-222 776.5 490 72.4
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 1.0e-221 773.5 490 71.2
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.5e-220 769.6 492 72.2
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.5e-220 769.6 491 71.9
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 5.7e-220 767.7 492 70.3
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 7.4e-220 767.3 492 70.3
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 9.7e-220 766.9 528 68.4
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 1.7e-219 766.1 492 69.7
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.7e-219 765.0 522 68.6
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 4.8e-219 764.6 492 69.7
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 4.8e-219 764.6 492 69.7
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 6.3e-219 764.2 492 69.7
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 6.3e-219 764.2 492 69.7
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 6.3e-219 764.2 492 71.7
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 6.3e-219 764.2 492 71.5
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.1e-218 763.5 491 70.7
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 1.4e-218 763.1 493 70.2
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 3.1e-218 761.9 491 70.3
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 5.3e-218 761.1 491 70.1
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 6.9e-218 760.8 491 70.1
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 6.9e-218 760.8 491 72.1
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 9.1e-218 760.4 491 69.9
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 9.1e-218 760.4 493 69.8
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 9.1e-218 760.4 493 69.8
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 9.1e-218 760.4 492 69.5
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.5e-217 759.6 528 67.8
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 3.4e-217 758.4 491 71.7
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 1.7e-216 756.1 490 69.2
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 2.9e-216 755.4 514 67.5
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.2e-215 751.9 481 71.5
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 4.7e-214 748.0 491 70.5
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.0e-213 746.9 616 59.7
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 8.8e-213 743.8 493 70.2
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.7e-211 739.6 687 54.4
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.4e-210 736.5 473 70.6
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 4.1e-210 734.9 492 68.3
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.2e-209 733.4 491 68.4
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.1e-207 726.9 492 68.3
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 1.1e-202 710.3 480 68.3
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.7e-190 669.1 491 64.8
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 6.6e-184 647.9 467 66.0
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 8.9e-181 637.5 491 61.9
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.2e-179 632.9 494 58.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.8e-174 615.9 497 57.3
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.1e-173 612.5 490 60.4
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 5.2e-173 611.7 386 72.3
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.2e-172 610.5 491 60.1
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 6.0e-169 598.2 479 58.7
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.3e-168 597.0 467 61.2
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.2e-163 579.7 490 55.7
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.9e-159 566.6 491 54.8
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.3e-157 559.7 373 67.3
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 3.6e-150 535.8 435 59.5
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 4.3e-143 512.3 310 75.5
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 6.2e-142 508.4 370 64.9
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 2.6e-124 449.9 305 67.5
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.4e-104 384.4 442 48.9
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 2.4e-85 320.5 194 75.3
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 5.5e-74 282.7 171 74.3
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 7.5e-71 272.3 184 68.5
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 3.2e-61 240.4 147 76.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.8e-48 198.0 355 35.5
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 2.0e-47 194.5 104 81.7
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.6e-47 194.1 141 63.1
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.2e-45 185.7 160 54.4
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 1.9e-42 177.9 99 80.8
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 9.5e-42 175.6 114 69.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 5.4e-37 159.8 83 80.7
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.0e-35 155.6 106 65.1
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.6e-35 152.5 103 72.8
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.2e-33 146.4 97 67.0
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.3e-27 128.6 66 86.4
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.4e-24 118.6 164 39.0
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.3e-24 116.7 82 70.7
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 2.4e-21 107.8 361 26.6
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.1e-20 104.8 51 84.3
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.5e-20 104.0 80 61.2
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.3e-19 101.3 58 75.9
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.3e-19 101.3 58 75.9
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.9e-19 100.5 58 75.9
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.7e-19 99.4 80 58.8
Hund05747 Selenicereus undatus HOM05D001762 ORTHO05D001774 7.4e-18 96.3 412 23.3
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 4.8e-17 93.6 183 29.5
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 6.2e-17 93.2 166 30.1
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.1e-16 92.4 138 39.9
Sed0011237 Sechium edule HOM05D001762 ORTHO05D001774 2.0e-15 88.2 173 29.5
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-15 87.8 73 58.9
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-15 87.8 73 58.9
SalBow6G6099 Salvia bowleyana HOM05D001762 ORTHO05D001774 9.9e-15 85.9 185 28.6
CAN.G825.17 Capsicum annuum HOM05D001762 ORTHO05D001774 5.5e-13 80.1 173 28.9
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 1.6e-09 68.6 32 75.0
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 1.3e-06 58.9 201 25.9
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 2.9e-06 57.8 142 29.6
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 8.4e-06 56.2 31 74.2


User provided reference genes

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