Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 2113.2 1115 100.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1543.9 1160 72.4
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1537.3 1129 71.1
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1519.6 1137 70.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1513.0 1150 72.5
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1493.0 1149 69.8
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1488.0 1132 69.6
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1487.2 1156 69.2
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1479.9 1222 67.8
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1473.8 1161 69.3
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1463.0 1262 64.7
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1461.8 1142 69.8
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1447.6 1159 68.1
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1439.5 1125 68.8
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1436.4 1148 67.5
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1436.0 1151 68.6
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1433.3 1133 69.4
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1427.9 1127 69.8
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1421.4 1015 72.5
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1421.0 1131 66.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1415.6 1094 68.6
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1414.8 1078 69.9
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1412.5 1152 66.6
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1411.0 1131 66.0
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1403.7 1078 69.5
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1402.5 1122 66.7
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1395.6 1112 68.8
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1387.9 1112 63.9
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1385.5 1181 63.4
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 1140 63.9
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1380.2 1100 67.2
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1376.3 1131 63.2
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1375.9 1136 67.8
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1374.0 1130 65.8
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1372.1 1135 64.1
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1371.7 1155 63.7
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1369.0 1147 64.8
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1365.1 1108 63.5
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1364.7 1124 65.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1362.8 1140 65.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1360.1 1013 70.0
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1357.8 1142 63.2
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1355.9 1117 65.9
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1352.8 1145 63.3
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1347.8 1162 64.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1347.0 1146 64.4
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1343.9 1138 63.8
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1342.8 1120 63.8
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1339.3 1141 62.3
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1338.9 1117 64.7
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1335.9 1161 61.9
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1335.5 1127 64.9
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1335.1 1127 66.8
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1334.7 1124 64.8
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1331.6 1155 62.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1329.7 1127 64.5
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1328.9 1125 64.7
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1325.1 1108 63.5
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1320.1 1145 63.3
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1319.3 1142 61.5
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1317.4 1152 62.4
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1312.4 1050 64.8
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1311.2 1158 62.9
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1306.2 1097 63.1
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1305.4 1123 61.2
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1305.0 1163 61.1
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1303.9 1119 64.3
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1301.6 1139 62.6
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1301.6 999 66.9
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1299.3 1104 64.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1297.3 1133 61.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1294.3 1085 62.0
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1287.3 1073 62.9
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1282.7 1087 61.8
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1280.8 1047 62.7
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1275.8 1135 62.2
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1275.0 1118 62.9
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1273.1 1374 51.7
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 1051 62.1
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1269.6 1087 61.3
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1267.3 1086 60.5
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1265.8 1066 61.4
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1265.8 1137 63.9
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1263.4 1098 62.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1258.0 1082 60.4
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1254.2 1119 62.3
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1252.7 1084 60.3
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1250.0 1082 60.2
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1249.2 1080 60.1
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1244.6 1094 59.8
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1229.9 1128 61.7
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1200.7 918 67.3
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1200.3 901 67.3
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1196.8 1057 60.1
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1190.6 1086 58.6
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1166.4 1053 60.0
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1156.7 996 59.8
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1152.5 1064 57.0
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1148.7 1043 59.1
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1131.7 1013 57.1
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1106.7 1058 54.1
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1088.2 887 68.5
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 8.3e-309 1063.9 1106 53.8
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-306 1055.8 676 78.0
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 3.0e-306 1055.4 815 67.7
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 8.9e-303 1043.9 1087 54.2
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.7e-291 1005.7 956 55.5
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.5e-289 1000.0 1133 50.7
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 5.1e-282 974.9 1034 50.3
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 9.3e-268 927.5 1087 47.7
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 9.3e-260 901.0 784 61.0
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.8e-253 879.0 965 47.8
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 3.8e-237 825.9 665 68.4
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 3.3e-233 812.8 1006 46.4
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.2e-226 788.9 546 74.4
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.2e-226 788.9 546 74.4
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.6e-217 760.0 597 67.3
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.1e-194 684.9 1012 39.9
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.7e-152 544.7 349 77.7
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 7.0e-98 363.2 386 53.9
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 4.1e-66 257.7 201 65.2
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 4.3e-55 221.1 144 73.6
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 2.1e-54 218.8 584 26.5
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 4.5e-52 211.1 164 66.5
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 2.8e-46 191.8 195 59.0
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.2e-46 190.7 212 50.0
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.9e-43 181.8 220 48.2
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 2.7e-41 175.3 171 57.9
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.3e-38 166.4 154 56.5
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 8.2e-38 163.7 393 31.0
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.0e-37 160.2 174 52.3
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 3.4e-36 158.3 638 23.8
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.0e-28 132.5 133 54.9
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 9.7e-23 113.6 97 59.8
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 4.7e-17 94.7 244 27.0
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.7e-14 86.3 103 46.6
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 6.3e-14 84.3 272 29.4
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.2e-09 70.1 68 55.9
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.1e-09 67.8 83 49.4
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.4e-08 66.6 68 51.5
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.4e-08 66.6 45 64.4
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.1e-07 63.5 127 33.9
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 5.7e-07 61.2 82 43.9
Solyc05g023600.3 Solanum lycopersicum HOM05D004682 ORTHO05D006197 3.7e-06 58.5 50 60.0
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 4.8e-06 58.2 68 48.5


User provided reference genes

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