Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 2863.6 1396 100.0
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1533.9 1441 55.5
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1520.0 1513 53.3
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1507.3 1461 54.9
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1492.6 1472 54.4
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1485.3 1480 53.5
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1461.8 1512 52.6
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1461.0 1498 52.5
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1459.5 1450 52.7
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1459.1 1468 52.5
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1442.6 1482 51.7
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1440.2 1453 52.4
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1437.9 1472 52.5
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1429.8 1472 51.7
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1421.0 1465 51.4
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1407.1 1464 53.1
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1401.7 1418 55.0
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1401.7 1459 50.9
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1401.0 1459 51.1
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1401.0 1467 50.9
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1399.4 1432 51.8
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1388.2 1451 52.2
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1385.9 1469 51.4
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1382.9 1462 52.1
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1380.9 1453 50.9
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1377.8 1464 51.2
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1375.5 1455 50.5
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1374.8 1471 51.3
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1373.2 1409 52.1
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1365.9 1475 49.4
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1364.7 1467 49.2
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1364.0 1464 50.8
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1363.2 1478 49.6
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1362.4 1462 51.4
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1359.7 1551 47.9
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1359.7 1455 50.2
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1352.0 1478 50.1
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1347.8 1456 49.5
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1347.0 1421 49.2
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1344.7 1456 49.7
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1344.7 1471 49.7
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1342.8 1456 49.9
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1342.8 1447 50.7
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1336.6 1446 49.0
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1332.8 1468 49.3
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1327.8 1464 49.3
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1325.5 1421 48.9
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1325.1 1468 49.2
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1324.3 1421 48.6
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1320.1 1408 49.2
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1319.3 1407 49.0
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1317.4 1409 49.4
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1317.0 1410 49.3
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1316.2 1423 48.7
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1314.3 1428 49.6
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1314.3 1414 48.9
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1312.7 1465 48.7
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1311.2 1407 50.0
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1306.6 1410 49.0
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1304.7 1430 48.2
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1302.3 1449 49.7
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1298.9 1205 55.2
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1297.0 1417 47.4
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1292.7 1427 50.6
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1289.6 1419 49.9
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1288.9 1463 47.6
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1283.1 1466 48.8
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1275.4 1445 48.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1269.6 1403 50.7
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1248.0 1452 47.4
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1230.3 1215 52.8
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1228.0 1372 48.7
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1226.1 1456 46.7
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1219.1 1538 46.3
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1202.2 1486 45.4
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1198.0 1439 46.7
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1175.2 1230 51.0
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1146.0 1144 51.7
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1145.6 1443 44.6
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1133.6 1024 56.2
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1122.1 1034 54.5
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1097.0 1109 52.1
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1097.0 1109 52.0
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1093.2 1425 44.2
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 5.4e-305 1051.6 1093 48.9
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 7.2e-302 1041.2 1487 42.3
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 4.7e-269 932.2 947 52.2
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.2e-259 901.0 1455 39.0
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.6e-240 837.4 881 52.2
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.7e-221 773.1 806 52.4
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 2.6e-211 740.3 1542 33.1
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 1.1e-209 734.9 1547 34.1
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.1e-206 724.9 820 49.4
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 1.1e-204 718.4 777 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 3.0e-199 700.3 1543 32.2
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 1.6e-195 688.0 1388 34.7
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 4.8e-189 666.4 666 52.0
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.1e-180 638.6 670 50.7
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 9.5e-177 625.5 651 50.7
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.7e-173 613.6 641 50.4
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 7.3e-169 599.4 766 46.1
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.4e-164 584.3 824 40.7
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.5e-158 565.1 649 49.6
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.2e-144 516.5 877 39.3
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 9.0e-143 512.7 1363 31.3
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 4.0e-127 460.7 675 43.4
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 1.4e-106 392.5 392 55.6
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 3.7e-96 357.8 417 47.7
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-83 315.5 402 43.5
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 2.0e-81 308.9 369 48.0
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 1.9e-68 265.8 357 45.4
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.3e-64 250.8 351 39.6
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 2.7e-62 245.4 264 53.0
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 9.5e-60 236.9 299 43.5
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-57 227.6 378 37.0
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 3.5e-54 218.4 256 49.6
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 7.3e-52 210.7 210 51.4
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 1.2e-51 209.9 256 41.8
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 1.6e-51 209.5 1128 25.4
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 2.3e-50 205.7 236 51.7
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 4.0e-50 204.9 201 49.3
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 9.8e-49 200.3 219 46.1
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 1.7e-48 199.5 772 26.8
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-46 190.7 451 30.4
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.1e-44 186.8 197 50.3
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 7.1e-39 167.5 192 48.4
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 3.1e-34 152.1 189 44.4
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.6e-33 147.5 154 45.5
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 7.8e-30 137.5 109 53.2
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 3.9e-29 135.2 123 56.1
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 9.0e-26 124.0 88 65.9
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 4.4e-25 121.7 91 61.5
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 2.9e-24 119.0 115 46.1
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 3.8e-24 118.6 77 64.9
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 1.1e-20 107.1 259 32.4
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.1e-19 102.8 204 35.3
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 3.6e-19 102.1 85 58.8
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.4e-15 90.1 95 46.3
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.1e-12 80.5 106 41.5
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 7.4e-12 77.8 64 57.8
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 7.4e-12 77.8 73 53.4
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.2e-11 74.7 49 73.5
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.2e-11 74.7 49 73.5
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.4e-10 73.6 74 54.1
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 9.0e-10 70.9 49 71.4
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.2e-09 70.5 49 71.4
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.5e-09 70.1 82 47.6
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.5e-09 70.1 50 72.0
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 2.6e-09 69.3 63 55.6
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 5.8e-09 68.2 73 49.3
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 4.9e-08 65.1 52 59.6
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 4.6e-06 58.5 38 65.8
RcHm_v2.0_Chr5g0074851 Rosa chinensis HOM05D005961 ORTHO05D007391 6.0e-06 58.2 132 31.8


User provided reference genes

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