Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 2004.2 1013 100.0
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1413.3 1015 70.2
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1403.3 1012 68.9
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1391.3 1001 69.3
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1377.5 1012 67.5
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1374.4 1012 67.8
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1363.6 1012 66.9
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1362.8 996 67.5
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1354.7 1015 66.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1352.8 1063 65.6
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1350.5 987 68.2
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1348.2 992 68.5
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1347.0 1021 67.2
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1341.3 1012 66.0
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1340.5 1012 65.5
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1340.5 1018 66.0
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1338.6 1012 66.4
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1336.6 1013 65.9
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1333.9 1012 64.6
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1333.2 1012 66.0
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1332.8 1009 66.5
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1332.4 1012 65.6
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1327.0 998 66.1
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1325.8 1012 65.6
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1324.3 1015 66.0
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1324.3 1077 63.0
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1321.6 998 65.7
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1321.6 1034 65.3
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1313.5 1013 64.6
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1310.8 1014 65.7
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1305.8 1012 65.3
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1303.5 1014 65.2
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1302.7 1014 64.6
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1295.8 1014 63.9
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1295.4 1012 64.1
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1288.9 1013 63.8
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1275.8 1012 63.7
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1275.0 1018 63.2
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1267.7 1013 62.7
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1266.1 1014 62.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1265.4 1019 63.3
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1262.7 1013 61.4
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1261.1 1013 62.4
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1258.0 1007 63.1
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1257.7 1013 61.2
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1255.7 1012 63.3
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1253.8 1018 62.7
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1252.3 1014 62.0
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1248.8 1014 61.7
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1246.1 1011 61.1
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1245.0 1013 61.7
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1239.2 1013 61.6
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1236.1 1010 62.4
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1231.1 1015 62.8
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1228.4 1075 58.0
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1219.5 1011 60.8
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1215.7 1012 60.3
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1215.3 1014 60.3
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1212.2 1014 60.4
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1206.4 1013 60.4
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1193.3 1013 59.7
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1189.5 1017 59.3
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1187.6 1019 60.1
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1186.0 1012 59.9
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1186.0 1015 59.5
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1185.2 1014 59.0
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1184.9 1015 59.6
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1183.7 1013 59.0
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1176.0 1014 59.4
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1175.6 1020 59.3
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1173.7 1014 59.3
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1156.4 1013 57.4
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1155.2 1014 58.7
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1154.8 1014 58.4
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1154.8 1014 58.4
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1153.7 1017 58.4
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1152.5 1024 57.7
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1152.5 1014 58.3
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1125.5 1013 57.7
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1115.1 986 58.1
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1093.2 776 68.8
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1089.7 796 68.3
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 1.4e-311 1073.2 1016 56.3
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.1e-304 1050.0 1014 54.1
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.5e-301 1039.6 781 66.2
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 5.6e-288 994.6 1014 51.9
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 5.7e-272 941.4 692 67.8
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 1.6e-271 939.9 594 77.6
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 8.5e-268 927.5 610 74.1
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.5e-261 906.7 980 51.0
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 8.2e-247 857.8 753 57.4
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.6e-240 836.3 773 55.1
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 6.1e-234 815.1 1006 46.8
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 8.0e-234 814.7 1029 44.9
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 9.1e-230 801.2 1031 44.3
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.0e-221 773.5 871 47.5
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.9e-219 766.9 1015 45.5
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.7e-204 717.2 504 68.8
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.1e-203 714.5 504 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 9.6e-187 658.3 1052 39.4
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 7.1e-182 642.1 535 60.7
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.8e-178 629.4 528 61.7
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 4.8e-178 629.4 513 62.2
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 4.0e-177 626.3 453 68.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 2.9e-175 620.2 1031 38.2
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.0e-172 611.7 572 56.6
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 8.1e-170 602.1 432 69.7
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 3.8e-167 593.2 513 60.4
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.9e-158 564.3 463 60.3
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.5e-155 554.7 1024 33.8
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 2.8e-154 550.4 421 65.1
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 2.2e-130 471.1 629 42.4
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 7.7e-120 436.0 1105 30.5
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 8.8e-116 422.5 536 44.8
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 4.4e-107 393.7 266 76.3
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.2e-106 391.3 423 49.6
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 4.1e-105 387.1 237 77.6
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.4e-97 361.3 237 74.7
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.9e-90 337.8 296 56.8
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 2.2e-82 311.6 334 51.2
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.9e-82 310.5 318 52.8
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.5e-78 298.9 315 52.1
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.9e-78 298.5 453 40.6
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 5.3e-52 210.7 424 35.1
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 3.4e-51 208.0 422 35.3
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 3.4e-51 208.0 392 38.0
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 1.0e-47 196.4 109 85.3
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 2.2e-45 188.7 163 60.1
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 2.2e-45 188.7 163 60.1
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 2.2e-42 178.7 715 26.7
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 4.6e-40 171.0 397 34.0
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 4.6e-40 171.0 228 43.9
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 1.0e-39 169.9 733 26.2
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 3.0e-39 168.3 393 33.1
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 2.0e-35 155.6 756 24.1
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 3.8e-34 151.4 313 35.8
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 4.4e-30 137.9 161 47.8
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.4e-28 132.9 116 60.3
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 5.9e-27 127.5 391 30.4
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 2.2e-26 125.6 125 56.0
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 1.6e-24 119.4 76 76.3
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 3.6e-24 118.2 337 27.0
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 2.2e-21 109.0 155 41.9
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 4.8e-21 107.8 76 68.4
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 2.0e-19 102.4 89 56.2
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 2.1e-16 92.4 77 63.6
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-14 86.3 143 39.9
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 5.7e-14 84.3 162 32.1
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 5.7e-14 84.3 51 74.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 7.0e-12 77.4 46 80.4
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.6e-11 76.3 109 40.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.7e-10 72.8 69 55.1
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 5.2e-07 61.2 120 34.2


User provided reference genes

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