Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 2.7e-41 171.4 78 100.0
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 5.2e-32 140.6 77 80.5
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 6.8e-32 140.2 73 82.2
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.2e-31 139.4 78 79.5
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.5e-31 139.0 72 80.6
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.5e-31 139.0 76 77.6
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 2.0e-31 138.7 78 76.9
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 2.6e-31 138.3 76 75.0
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.4e-31 137.9 78 78.2
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 3.4e-31 137.9 76 75.0
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 7.5e-31 136.7 78 80.8
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 7.5e-31 136.7 76 78.9
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 7.5e-31 136.7 79 75.9
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 7.5e-31 136.7 79 75.9
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 7.5e-31 136.7 79 75.9
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 7.5e-31 136.7 76 77.6
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 9.8e-31 136.3 75 80.0
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 9.8e-31 136.3 76 78.9
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 9.8e-31 136.3 74 82.4
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.3e-30 136.0 84 73.8
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 2.2e-30 135.2 76 77.6
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.8e-30 134.8 76 76.3
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.8e-30 134.8 78 76.9
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 3.7e-30 134.4 77 77.9
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 3.7e-30 134.4 72 79.2
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 3.7e-30 134.4 81 76.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 4.8e-30 134.0 77 76.6
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 4.8e-30 134.0 77 76.6
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 6.3e-30 133.7 78 78.2
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 8.3e-30 133.3 72 80.6
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.1e-29 132.9 76 76.3
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-29 132.9 77 75.3
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.1e-29 132.9 77 75.3
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.1e-29 132.9 75 74.7
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.4e-29 132.5 76 75.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 1.4e-29 132.5 77 76.6
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.4e-29 132.5 77 75.3
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.8e-29 132.1 76 76.3
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 2.4e-29 131.7 74 73.0
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.4e-29 131.7 77 74.0
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 2.4e-29 131.7 73 76.7
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 2.4e-29 131.7 76 73.7
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 2.4e-29 131.7 74 78.4
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 2.4e-29 131.7 72 79.2
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 2.4e-29 131.7 84 70.2
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 2.4e-29 131.7 74 77.0
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 3.1e-29 131.3 76 75.0
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.1e-29 131.3 77 74.0
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 4.1e-29 131.0 76 75.0
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 4.1e-29 131.0 76 73.7
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 5.4e-29 130.6 75 70.7
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 5.4e-29 130.6 75 70.7
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 5.4e-29 130.6 75 70.7
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 5.4e-29 130.6 79 73.4
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.4e-29 130.6 79 72.2
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.4e-29 130.6 79 72.2
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 5.4e-29 130.6 72 76.4
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 7.0e-29 130.2 70 78.6
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 7.0e-29 130.2 76 73.7
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 7.0e-29 130.2 77 74.0
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 9.1e-29 129.8 74 71.6
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 9.1e-29 129.8 75 73.3
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 9.1e-29 129.8 73 75.3
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.2e-28 129.4 75 73.3
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.2e-28 129.4 79 72.2
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.2e-28 129.4 76 73.7
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.2e-28 129.4 76 73.7
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.6e-28 129.0 75 70.7
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.6e-28 129.0 80 68.8
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.6e-28 129.0 73 75.3
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.6e-28 129.0 72 75.0
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 2.0e-28 128.6 74 71.6
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 2.0e-28 128.6 83 68.7
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.0e-28 128.6 74 74.3
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.0e-28 128.6 74 74.3
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.0e-28 128.6 74 74.3
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.0e-28 128.6 73 75.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 2.7e-28 128.3 70 77.1
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 3.5e-28 127.9 79 69.6
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 3.5e-28 127.9 74 71.6
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.5e-28 127.9 74 71.6
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.5e-28 127.9 74 71.6
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.5e-28 127.9 82 70.7
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 4.5e-28 127.5 76 68.4
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 5.9e-28 127.1 72 73.6
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 5.9e-28 127.1 79 69.6
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 5.9e-28 127.1 76 72.4
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.9e-28 127.1 81 70.4
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 5.9e-28 127.1 74 71.6
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 7.7e-28 126.7 75 69.3
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 7.7e-28 126.7 75 69.3
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 7.7e-28 126.7 80 68.8
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 7.7e-28 126.7 80 68.8
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 7.7e-28 126.7 72 75.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 7.7e-28 126.7 82 65.9
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.7e-28 126.7 71 76.1
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 7.7e-28 126.7 71 74.6
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 7.7e-28 126.7 84 70.2
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-27 125.9 70 72.9
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-27 125.9 75 69.3
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.3e-27 125.9 82 65.9
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.7e-27 125.6 74 70.3
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.7e-27 125.6 75 69.3
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 2.9e-27 124.8 75 69.3
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 2.9e-27 124.8 75 69.3
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.5e-26 122.5 63 82.5
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.9e-26 122.1 71 73.2
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 4.2e-26 120.9 96 59.4
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.7e-25 118.2 80 63.8
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.3e-24 115.2 63 79.4
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 8.3e-22 106.7 143 41.3
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 5.0e-19 97.4 68 61.8
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 8.0e-17 90.1 80 55.0
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 2.3e-16 88.6 61 59.0
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 5.2e-16 87.4 57 70.2
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.2e-15 86.3 52 73.1
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.0e-15 85.5 53 73.6
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 2.6e-15 85.1 51 72.5
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 4.4e-15 84.3 53 67.9
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 4.4e-15 84.3 49 77.6
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 7.5e-15 83.6 52 67.3
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 7.5e-15 83.6 51 72.5
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 1.3e-14 82.8 51 70.6
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.7e-14 81.3 60 65.0
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 3.7e-14 81.3 54 66.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.7e-14 81.3 56 66.1
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 4.9e-14 80.9 56 66.1
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 4.9e-14 80.9 53 69.8
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 4.9e-14 80.9 49 71.4
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 8.3e-14 80.1 53 66.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 8.3e-14 80.1 59 64.4
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 8.3e-14 80.1 53 66.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 8.3e-14 80.1 53 66.0
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-13 79.3 54 68.5
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-13 79.3 54 68.5
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.4e-13 78.6 51 68.6
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 4.1e-13 77.8 49 65.3
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.2e-12 76.3 59 62.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.5e-12 74.7 53 67.9
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.6e-12 74.3 48 66.7
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 5.0e-11 70.9 76 48.7
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.9e-10 68.9 70 50.0
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.9e-10 68.9 65 47.7
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.8e-09 65.1 52 61.5
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.7e-09 64.3 39 71.8


User provided reference genes

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