Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018134 Daucus carota HOM05D001263 ORTHO05D001120 3.8e-82 308.1 158 100.0
DCAR_018135 Daucus carota HOM05D001263 ORTHO05D001120 6.6e-34 147.9 243 42.4
Manes.06G140500 Manihot esculenta HOM05D001263 ORTHO05D001120 6.0e-19 98.2 234 32.9
Lj1A987G38 Lonicera japonica HOM05D001263 ORTHO05D001120 5.0e-18 95.1 151 41.1
Actinidia32918 Actinidia chinensis HOM05D001263 ORTHO05D001120 1.1e-17 94.0 185 40.5
QL12p039031 Quercus lobata HOM05D001263 ORTHO05D001120 1.2e-16 90.5 236 32.2
vmacro22544 Vaccinium macrocarpon HOM05D001263 ORTHO05D001120 3.6e-16 89.0 196 35.2
vmacro23176 Vaccinium macrocarpon HOM05D001263 ORTHO05D001120 3.6e-16 89.0 196 35.2
Manes.14G031600 Manihot esculenta HOM05D001263 ORTHO05D001120 1.1e-15 87.4 237 30.4
CSS0022137 Camellia sinensis var. sinensis HOM05D001263 ORTHO05D001120 3.4e-14 82.4 233 30.5
Ciclev10006628m.g Citrus clementina HOM05D001263 ORTHO05D001120 4.9e-13 78.6 247 29.1
Sabra12G0099300 Salix brachista HOM05D001263 ORTHO05D001120 4.9e-13 78.6 231 30.7
Thecc.03G165700 Theobroma cacao HOM05D001263 ORTHO05D001120 4.9e-13 78.6 235 31.9
GSVIVG01018461001 Vitis vinifera HOM05D001263 ORTHO05D001120 6.4e-13 78.2 229 31.0
CiPaw.03G099100 Carya illinoinensis HOM05D001263 ORTHO05D001120 1.1e-12 77.4 239 28.0
GSVIVG01018460001 Vitis vinifera HOM05D001263 ORTHO05D001120 3.2e-12 75.9 76 52.6
Potri.012G132000 Populus trichocarpa HOM05D001263 ORTHO05D001120 1.6e-11 73.6 239 28.9
Dinv28514 Davidia involucrata HOM05D001263 ORTHO05D001120 2.7e-11 72.8 78 52.6
Peaxi162Scf01178g00119 Petunia axillaris HOM05D001263 ORTHO05D001120 2.7e-11 72.8 78 48.7
TWI14G0763 Tripterygium wilfordii HOM05D001263 ORTHO05D001120 4.6e-11 72.0 80 47.5
Rhsim09G0194900 Rhododendron simsii HOM05D001263 ORTHO05D001120 6.0e-11 71.6 77 46.8
GSVIVG01018459001 Vitis vinifera HOM05D001263 ORTHO05D001120 6.0e-11 71.6 86 46.5
PSO478G1422 Papaver somniferum HOM05D001263 ORTHO05D001120 1.0e-10 70.9 77 46.8
QL12p039006 Quercus lobata HOM05D001263 ORTHO05D001120 1.0e-10 70.9 78 43.6
Atru.chr1.588 Acer truncatum HOM05D001263 ORTHO05D001120 2.3e-10 69.7 79 48.1
CsaV3_3G016570 Cucumis sativus L. HOM05D001263 ORTHO05D001120 2.3e-10 69.7 71 49.3
Carub.0002s0204 Capsella rubella HOM05D001263 ORTHO05D001120 3.9e-10 68.9 77 42.9
Dinv35129 Davidia involucrata HOM05D001263 ORTHO05D001120 3.9e-10 68.9 203 32.0
Rhsim03G0173800 Rhododendron simsii HOM05D001263 ORTHO05D001120 5.1e-10 68.6 234 28.2
PSO782G4971 Papaver somniferum HOM05D001263 ORTHO05D001120 6.6e-10 68.2 77 46.8
Nitab4.5_0001341g0050 Nicotiana tabacum HOM05D001263 ORTHO05D001120 8.6e-10 67.8 253 30.0
PSO478G2013 Papaver somniferum HOM05D001263 ORTHO05D001120 1.1e-09 67.4 73 47.9
Duzib068G0300 Durio zibethinus HOM05D001263 ORTHO05D001120 1.5e-09 67.0 216 29.2
Thhalv10023637m.g Eutrema salsugineum HOM05D001263 ORTHO05D001120 1.5e-09 67.0 85 41.2
Gohir.D12G263400 Gossypium hirsutum HOM05D001263 ORTHO05D001120 1.9e-09 66.6 74 45.9
Gorai.008G282400 Gossypium raimondii HOM05D001263 ORTHO05D001120 1.9e-09 66.6 74 45.9
Thecc.03G267100 Theobroma cacao HOM05D001263 ORTHO05D001120 1.9e-09 66.6 215 31.2
PSO782G0335 Papaver somniferum HOM05D001263 ORTHO05D001120 2.5e-09 66.2 102 38.2
Sp2g01630 Schrenkiella parvula HOM05D001263 ORTHO05D001120 2.5e-09 66.2 71 46.5
Haze_13800 Corylus avellana HOM05D001263 ORTHO05D001120 3.3e-09 65.9 78 42.3
CiPaw.03G099000 Carya illinoinensis HOM05D001263 ORTHO05D001120 5.6e-09 65.1 228 30.3
Manes.06G140600 Manihot esculenta HOM05D001263 ORTHO05D001120 5.6e-09 65.1 74 44.6
Rhsim03G0173900 Rhododendron simsii HOM05D001263 ORTHO05D001120 5.6e-09 65.1 244 27.0
Sed0008464 Sechium edule HOM05D001263 ORTHO05D001120 5.6e-09 65.1 77 42.9
BcaC06g31924 Brassica carinata HOM05D001263 ORTHO05D001120 7.3e-09 64.7 75 45.3
Nitab4.5_0001306g0010 Nicotiana tabacum HOM05D001263 ORTHO05D001120 9.5e-09 64.3 80 42.5
Cfa012063 Carpinus fangiana HOM05D001263 ORTHO05D001120 1.2e-08 63.9 128 35.2
Potri.015G134300 Populus trichocarpa HOM05D001263 ORTHO05D001120 1.2e-08 63.9 67 47.8
Sabra15G0146400 Salix brachista HOM05D001263 ORTHO05D001120 1.2e-08 63.9 247 28.7
vmacro06751 Vaccinium macrocarpon HOM05D001263 ORTHO05D001120 1.2e-08 63.9 221 28.1
vmacro23177 Vaccinium macrocarpon HOM05D001263 ORTHO05D001120 1.2e-08 63.9 221 28.1
BcaC04g22735 Brassica carinata HOM05D001263 ORTHO05D001120 1.6e-08 63.5 77 41.6
Cpa.g.sc4.181 Carica papaya HOM05D001263 ORTHO05D001120 1.6e-08 63.5 74 40.5
Gohir.A12G262900 Gossypium hirsutum HOM05D001263 ORTHO05D001120 1.6e-08 63.5 231 27.3
Gohir.D07G044200 Gossypium hirsutum HOM05D001263 ORTHO05D001120 1.6e-08 63.5 78 42.3
C09p15800 Brassica napus HOM05D001263 ORTHO05D001120 2.1e-08 63.2 74 43.2
Ciclev10006639m.g Citrus clementina HOM05D001263 ORTHO05D001120 2.1e-08 63.2 114 36.0
MELO3C031789.2 Cucumis melo HOM05D001263 ORTHO05D001120 2.1e-08 63.2 71 45.1
Gorai.001G047300 Gossypium raimondii HOM05D001263 ORTHO05D001120 2.1e-08 63.2 78 42.3
Nitab4.5_0001757g0020 Nicotiana tabacum HOM05D001263 ORTHO05D001120 2.1e-08 63.2 262 27.9
QL12p038971 Quercus lobata HOM05D001263 ORTHO05D001120 2.1e-08 63.2 67 50.7
QL12p038997 Quercus lobata HOM05D001263 ORTHO05D001120 2.1e-08 63.2 67 50.7
A09p13290 Brassica napus HOM05D001263 ORTHO05D001120 2.8e-08 62.8 77 41.6
BraA09t36977Z Brassica rapa HOM05D001263 ORTHO05D001120 2.8e-08 62.8 77 41.6
Cfa008252 Carpinus fangiana HOM05D001263 ORTHO05D001120 2.8e-08 62.8 79 45.6
COL.COLO4_14215 Corchorus olitorius HOM05D001263 ORTHO05D001120 2.8e-08 62.8 246 28.0
CARHR048680 Cardamine hirsuta HOM05D001263 ORTHO05D001120 3.6e-08 62.4 77 39.0
ClCG05G007640 Citrullus lanatus HOM05D001263 ORTHO05D001120 3.6e-08 62.4 89 39.3
AT1G62975 Arabidopsis thaliana HOM05D001263 ORTHO05D001120 4.7e-08 62.0 74 43.2
Glyma.20G152900 Glycine max HOM05D001263 ORTHO05D001120 4.7e-08 62.0 246 29.7
Potri.001G113400 Populus trichocarpa HOM05D001263 ORTHO05D001120 4.7e-08 62.0 183 30.6
BolC9t54492H Brassica oleracea HOM05D001263 ORTHO05D001120 6.2e-08 61.6 74 41.9
Nitab4.5_0000072g0020 Nicotiana tabacum HOM05D001263 ORTHO05D001120 6.2e-08 61.6 70 47.1
TAR636G2369 Trochodendron aralioides HOM05D001263 ORTHO05D001120 6.2e-08 61.6 77 44.2
CSS0040348 Camellia sinensis var. sinensis HOM05D001263 ORTHO05D001120 8.1e-08 61.2 77 46.8
Cfa008251 Carpinus fangiana HOM05D001263 ORTHO05D001120 8.1e-08 61.2 79 41.8
Dinv39039 Davidia involucrata HOM05D001263 ORTHO05D001120 8.1e-08 61.2 77 44.2
FAN03G0198 Fragaria x ananassa HOM05D001263 ORTHO05D001120 8.1e-08 61.2 266 27.1
CANSAT21G0785 Cannabis sativa HOM05D001263 ORTHO05D001120 1.1e-07 60.8 78 50.0
Gohir.A07G040100 Gossypium hirsutum HOM05D001263 ORTHO05D001120 1.1e-07 60.8 77 40.3
Nitab4.5_0001757g0030 Nicotiana tabacum HOM05D001263 ORTHO05D001120 1.1e-07 60.8 70 47.1
PSO478G3251 Papaver somniferum HOM05D001263 ORTHO05D001120 1.1e-07 60.8 102 36.3
Prupe.2G286100 Prunus persica HOM05D001263 ORTHO05D001120 1.1e-07 60.8 77 49.4
AL2G12660 Arabidopsis lyrata HOM05D001263 ORTHO05D001120 1.4e-07 60.5 78 42.3
A06p09100 Brassica napus HOM05D001263 ORTHO05D001120 1.4e-07 60.5 73 41.1
Dinv35131 Davidia involucrata HOM05D001263 ORTHO05D001120 1.4e-07 60.5 59 55.9
Lsat_1_v5_gn_9_53541 Lactuca sativa HOM05D001263 ORTHO05D001120 1.4e-07 60.5 115 35.7
Lalb_Chr03g0032961 Lupinus albus HOM05D001263 ORTHO05D001120 1.4e-07 60.5 236 26.7
Thecc.03G267000 Theobroma cacao HOM05D001263 ORTHO05D001120 1.4e-07 60.5 97 40.2
Haze_08993 Corylus avellana HOM05D001263 ORTHO05D001120 1.8e-07 60.1 66 50.0
Lalb_Chr01g0008911 Lupinus albus HOM05D001263 ORTHO05D001120 1.8e-07 60.1 190 31.6
Gohir.D08G202100 Gossypium hirsutum HOM05D001263 ORTHO05D001120 2.3e-07 59.7 75 44.0
Phvul.004G124300 Phaseolus vulgaris HOM05D001263 ORTHO05D001120 2.3e-07 59.7 233 28.8
BraA06t24097Z Brassica rapa HOM05D001263 ORTHO05D001120 3.1e-07 59.3 73 41.1
Cc08_g13690 Coffea canephora HOM05D001263 ORTHO05D001120 3.1e-07 59.3 78 43.6
Gorai.008G085900 Gossypium raimondii HOM05D001263 ORTHO05D001120 3.1e-07 59.3 75 44.0
Gorai.010G053500 Gossypium raimondii HOM05D001263 ORTHO05D001120 3.1e-07 59.3 75 44.0
MD12G1112400 Malus domestica HOM05D001263 ORTHO05D001120 3.1e-07 59.3 83 41.0
vmacro09874 Vaccinium macrocarpon HOM05D001263 ORTHO05D001120 3.1e-07 59.3 77 41.6
FvH4_7g28590 Fragaria vesca HOM05D001263 ORTHO05D001120 4.0e-07 58.9 253 25.7
FAN06G0229 Fragaria x ananassa HOM05D001263 ORTHO05D001120 4.0e-07 58.9 253 25.7
vmacro09873 Vaccinium macrocarpon HOM05D001263 ORTHO05D001120 4.0e-07 58.9 57 50.9
Aqoxy7G00518 Aquilegia oxysepala HOM05D001263 ORTHO05D001120 5.2e-07 58.5 233 27.9
CAN.G28.4 Capsicum annuum HOM05D001263 ORTHO05D001120 5.2e-07 58.5 80 42.5
Thecc.03G165900 Theobroma cacao HOM05D001263 ORTHO05D001120 5.2e-07 58.5 78 44.9
vmacro22546 Vaccinium macrocarpon HOM05D001263 ORTHO05D001120 5.2e-07 58.5 228 27.6
Aa31LG2G460 Aethionema arabicum HOM05D001263 ORTHO05D001120 6.8e-07 58.2 79 38.0
CiPaw.03G099200 Carya illinoinensis HOM05D001263 ORTHO05D001120 6.8e-07 58.2 61 50.8
HanXRQChr07g0206721 Helianthus annuus HOM05D001263 ORTHO05D001120 6.8e-07 58.2 255 26.7
MD01G1191600 Malus domestica HOM05D001263 ORTHO05D001120 6.8e-07 58.2 178 26.4
BcaC09g50782 Brassica carinata HOM05D001263 ORTHO05D001120 8.9e-07 57.8 79 41.8
BcaNung03689 Brassica carinata HOM05D001263 ORTHO05D001120 8.9e-07 57.8 79 41.8
A01p16670 Brassica napus HOM05D001263 ORTHO05D001120 8.9e-07 57.8 79 41.8
C01p20890 Brassica napus HOM05D001263 ORTHO05D001120 8.9e-07 57.8 79 41.8
BolC1t02016H Brassica oleracea HOM05D001263 ORTHO05D001120 8.9e-07 57.8 79 41.8
BraA01t01621Z Brassica rapa HOM05D001263 ORTHO05D001120 8.9e-07 57.8 79 41.8
Duzib068G0864 Durio zibethinus HOM05D001263 ORTHO05D001120 8.9e-07 57.8 224 30.4
MD01G1191700 Malus domestica HOM05D001263 ORTHO05D001120 8.9e-07 57.8 77 48.1
VMungo0464G1288 Vigna mungo HOM05D001263 ORTHO05D001120 8.9e-07 57.8 234 26.9
Ah.07g208550 Amaranthus hybridus HOM05D001263 ORTHO05D001120 1.2e-06 57.4 78 37.2
Aqoxy5G03945 Aquilegia oxysepala HOM05D001263 ORTHO05D001120 1.2e-06 57.4 76 39.5
AUR62016072 Chenopodium quinoa HOM05D001263 ORTHO05D001120 1.2e-06 57.4 57 45.6
FAN01G1135 Fragaria x ananassa HOM05D001263 ORTHO05D001120 1.2e-06 57.4 266 25.2
FAN10G1110 Fragaria x ananassa HOM05D001263 ORTHO05D001120 1.2e-06 57.4 79 40.5
Gohir.A12G261900 Gossypium hirsutum HOM05D001263 ORTHO05D001120 1.2e-06 57.4 67 43.3
Sp7g23430 Schrenkiella parvula HOM05D001263 ORTHO05D001120 1.2e-06 57.4 79 40.5
BolC7t45917H Brassica oleracea HOM05D001263 ORTHO05D001120 1.5e-06 57.0 79 43.0
C07p54310 Brassica napus HOM05D001263 ORTHO05D001120 2.0e-06 56.6 79 43.0
Haze_13799 Corylus avellana HOM05D001263 ORTHO05D001120 2.0e-06 56.6 79 41.8
ECA232G1780 Erigeron canadensis HOM05D001263 ORTHO05D001120 2.0e-06 56.6 71 42.3
FAN10G4332 Fragaria x ananassa HOM05D001263 ORTHO05D001120 2.0e-06 56.6 75 42.7
MBI11_g37707_MAGBIO Magnolia biondii HOM05D001263 ORTHO05D001120 2.0e-06 56.6 94 35.1
Actinidia03094 Actinidia chinensis HOM05D001263 ORTHO05D001120 2.6e-06 56.2 214 27.6
Peaxi162Scf00156g00023 Petunia axillaris HOM05D001263 ORTHO05D001120 2.6e-06 56.2 212 25.0
Solyc06g035490.3 Solanum lycopersicum HOM05D001263 ORTHO05D001120 2.6e-06 56.2 82 43.9
Sopen06g011230 Solanum pennellii HOM05D001263 ORTHO05D001120 2.6e-06 56.2 82 43.9
BcaNung03690 Brassica carinata HOM05D001263 ORTHO05D001120 3.4e-06 55.8 79 40.5
CARHR232810 Cardamine hirsuta HOM05D001263 ORTHO05D001120 3.4e-06 55.8 99 38.4
Eucgr.D01948 Eucalyptus grandis HOM05D001263 ORTHO05D001120 3.4e-06 55.8 74 41.9
Gorai.008G282300 Gossypium raimondii HOM05D001263 ORTHO05D001120 3.4e-06 55.8 67 41.8
CANSAT21G1391 Cannabis sativa HOM05D001263 ORTHO05D001120 4.4e-06 55.5 81 45.7
Duzib205G0219 Durio zibethinus HOM05D001263 ORTHO05D001120 4.4e-06 55.5 241 25.3
Oeu023045.1 Olea europaea HOM05D001263 ORTHO05D001120 4.4e-06 55.5 77 46.8
Ah.13g067630 Amaranthus hybridus HOM05D001263 ORTHO05D001120 5.8e-06 55.1 58 44.8
CSS0038169 Camellia sinensis var. sinensis HOM05D001263 ORTHO05D001120 5.8e-06 55.1 224 28.1
Eucgr.K00181 Eucalyptus grandis HOM05D001263 ORTHO05D001120 5.8e-06 55.1 61 50.8
FAN06G4443 Fragaria x ananassa HOM05D001263 ORTHO05D001120 5.8e-06 55.1 264 24.6
THA.LOC104811499 Tarenaya hassleriana HOM05D001263 ORTHO05D001120 5.8e-06 55.1 79 41.8
BcaC06g32812 Brassica carinata HOM05D001263 ORTHO05D001120 7.6e-06 54.7 79 41.8
BcaC06g32813 Brassica carinata HOM05D001263 ORTHO05D001120 7.6e-06 54.7 79 40.5
ClCG01G003370 Citrullus lanatus HOM05D001263 ORTHO05D001120 7.6e-06 54.7 106 33.0
Ciclev10006887m.g Citrus clementina HOM05D001263 ORTHO05D001120 7.6e-06 54.7 73 43.8
FAN01G0658 Fragaria x ananassa HOM05D001263 ORTHO05D001120 7.6e-06 54.7 78 41.0
Peaxi162Scf00192g00715 Petunia axillaris HOM05D001263 ORTHO05D001120 7.6e-06 54.7 192 29.2
Solyc04g056535.1 Solanum lycopersicum HOM05D001263 ORTHO05D001120 7.6e-06 54.7 77 40.3
SGA_v2.0_scaffold2G01102 Striga asiatica HOM05D001263 ORTHO05D001120 7.6e-06 54.7 102 37.3
TWI81G0610 Tripterygium wilfordii HOM05D001263 ORTHO05D001120 7.6e-06 54.7 74 39.2
Carub.0007s1561 Capsella rubella HOM05D001263 ORTHO05D001120 9.9e-06 54.3 71 42.3
COL.COLO4_23806 Corchorus olitorius HOM05D001263 ORTHO05D001120 9.9e-06 54.3 113 37.2
Thhalv10014694m.g Eutrema salsugineum HOM05D001263 ORTHO05D001120 9.9e-06 54.3 79 38.0
Sp1g11120 Schrenkiella parvula HOM05D001263 ORTHO05D001120 9.9e-06 54.3 76 39.5
Sp6g14030 Schrenkiella parvula HOM05D001263 ORTHO05D001120 9.9e-06 54.3 78 38.5


User provided reference genes

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