Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 1.5e-167 592.8 317 100.0
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 1.6e-55 220.7 313 50.2
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 3.7e-52 209.5 325 45.8
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 6.3e-52 208.8 319 49.2
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 2.4e-51 206.8 307 48.2
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 5.3e-51 205.7 319 48.9
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 3.4e-50 203.0 322 46.6
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 1.3e-49 201.1 324 48.5
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 8.5e-49 198.4 311 47.9
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 8.5e-49 198.4 311 47.9
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 8.5e-49 198.4 311 47.9
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 3.6e-47 193.0 311 47.3
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 4.7e-47 192.6 319 46.4
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 4.7e-47 192.6 329 45.9
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 8.8e-46 188.3 296 46.6
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 1.5e-45 187.6 309 45.0
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 2.6e-45 186.8 333 43.2
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 3.3e-45 186.4 313 44.4
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 2.2e-44 183.7 322 42.5
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 2.8e-44 183.3 274 48.2
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 2.8e-44 183.3 334 44.0
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 6.3e-44 182.2 320 46.9
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 3.1e-43 179.9 319 45.5
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 5.3e-43 179.1 316 46.2
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 1.0e-41 174.9 330 45.8
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 1.3e-41 174.5 321 43.9
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 3.8e-41 172.9 299 44.8
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 8.5e-41 171.8 294 41.5
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.5e-40 171.0 277 48.0
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.9e-40 170.6 315 44.4
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 5.5e-40 169.1 328 42.7
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 7.2e-40 168.7 329 43.2
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 1.6e-39 167.5 291 43.3
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 1.4e-38 164.5 309 43.7
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 4.4e-37 159.5 277 47.7
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 5.7e-37 159.1 325 44.0
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 8.2e-36 155.2 267 47.2
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 4.1e-35 152.9 327 40.1
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 5.3e-35 152.5 210 48.6
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 9.1e-35 151.8 303 44.2
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 3.2e-32 143.3 313 37.4
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 1.4e-30 137.9 311 37.3
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 6.8e-30 135.6 314 40.8
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 6.8e-30 135.6 316 38.9
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 2.6e-29 133.7 360 37.5
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 4.4e-29 132.9 236 46.6
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 4.4e-29 132.9 310 43.5
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 5.7e-29 132.5 308 39.9
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 5.7e-29 132.5 333 37.2
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 2.2e-28 130.6 227 44.9
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 2.8e-28 130.2 284 40.1
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 2.8e-28 130.2 473 29.2
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 1.8e-27 127.5 343 37.9
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 2.4e-27 127.1 343 37.3
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 3.1e-27 126.7 345 37.7
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 2.0e-26 124.0 358 34.9
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 3.5e-26 123.2 317 41.3
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 4.5e-26 122.9 284 38.0
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 1.3e-25 121.3 291 40.5
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 2.9e-25 120.2 342 36.8
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 1.9e-24 117.5 316 38.3
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 3.2e-24 116.7 323 39.9
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 3.2e-24 116.7 306 37.6
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 4.2e-24 116.3 321 38.0
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 7.2e-24 115.5 320 38.8
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 2.8e-23 113.6 302 31.8
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 1.0e-22 111.7 309 34.3
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 2.3e-22 110.5 325 36.6
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 4.0e-22 109.8 325 36.6
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 1.5e-21 107.8 335 34.0
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 7.5e-21 105.5 328 33.8
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 1.3e-20 104.8 334 32.6
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 1.3e-20 104.8 334 32.6
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 1.3e-20 104.8 334 32.6
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 2.8e-20 103.6 305 33.8
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 4.9e-20 102.8 391 32.7
ECA233G0652 Erigeron canadensis HOM05D007548 ORTHO05D009527 8.3e-20 102.1 324 34.9
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 8.3e-20 102.1 281 35.9
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 4.1e-19 99.8 168 41.7
Lalb_Chr21g0304861 Lupinus albus HOM05D007548 ORTHO05D009527 7.0e-19 99.0 302 36.4
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 1.1e-16 91.7 304 33.9
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 3.3e-16 90.1 313 32.3
SGA_v2.0_scaffold486G52377 Striga asiatica HOM05D007548 ORTHO05D009527 4.3e-16 89.7 311 33.1
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 7.3e-16 89.0 297 33.3
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 2.8e-15 87.0 294 32.0
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 4.4e-13 79.7 272 33.5
FAN10G1395 Fragaria x ananassa HOM05D007548 ORTHO05D009527 5.7e-13 79.3 186 38.7
Aqoxy7G00579 Aquilegia oxysepala HOM05D007548 ORTHO05D009527 1.3e-12 78.2 358 31.0
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 9.2e-11 72.0 143 40.6
unitig_37.g12505 Utricularia gibba HOM05D007548 ORTHO05D009527 3.5e-10 70.1 263 36.9
A02p12160 Brassica napus HOM05D007548 ORTHO05D009527 1.1e-08 65.1 337 27.6
Ah.13g067520 Amaranthus hybridus HOM05D007548 ORTHO05D009527 5.6e-08 62.8 309 33.0
arahy.Tifrunner.gnm1.ann1.1QTB59 Arachis hypogaea HOM05D007548 ORTHO05D009527 1.2e-07 61.6 126 38.1
BolC2t08158H Brassica oleracea HOM05D007548 ORTHO05D009527 8.0e-07 58.9 334 25.7
BcaC03g14581 Brassica carinata HOM05D007548 ORTHO05D009527 1.4e-06 58.2 114 38.6


User provided reference genes

Program Settings